Top 10 genes with highest correlation to Rv2013/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2831/echA16 | (cc=0.5184) | info on Rv2831/echA16 |
| Rv0848/cysK2 | (cc=0.5071) | info on Rv0848/cysK2 |
| Rv1075c/- | (cc=0.4982) | info on Rv1075c/- |
| Rv3757c/proW | (cc=0.4878) | info on Rv3757c/proW |
| Rv0677c/mmpS5 | (cc=0.4778) | info on Rv0677c/mmpS5 |
| Rv0694/lldD1 | (cc=0.4717) | info on Rv0694/lldD1 |
| Rv1638A/- | (cc=0.4708) | info on Rv1638A/- |
| Rv2609c/- | (cc=0.4676) | info on Rv2609c/- |
| Rv3414c/sigD | (cc=0.4669) | info on Rv3414c/sigD |
| Rv2226/- | (cc=0.4648) | info on Rv2226/- |
Correlation of Rv2013/- with Rv2831/echA16
Normalized LFCs for Rv2013/-:
(description and provenance of datasets)
| Rv2013/- | Rv2831/echA16 | |
| Fe_supp_jason_reseq | -0.947 | -0.256 |
| low_pH_jason_reseq | -1.166 | 0.639 |
| NO_jason_reseq | 0.73 | -0.116 |
| B6_jason_reseq | -1.289 | 1.588 |
| MHCII_jason_reseq | 0.059 | 1.883 |
| Isoniazid02 | 4.388 | 2.51 |
| Rifampicin4 | -1.102 | 0.601 |
| Ethambutol3 | 3.976 | 2.881 |
| Meropenem3 | -1.109 | 0.048 |
| Vancomycin16 | -0.82 | 0.499 |
| Rv2680_day32 | -0.698 | -3.534 |
| H37Rv_KO_MarP | -1.599 | -0.086 |
| hypoxia_3wks | 0.459 | 0.861 |
| hypoxia_6wks | 1.013 | 0.489 |
| glycerol | 1.246 | 0.205 |
| cholesterol | -0.155 | 1.595 |
| AJ | 0.279 | 0.145 |
| Bibs02 | 0.695 | 0.54 |
| Bibs02c | 2.99 | -0.527 |
| BL6 | -1.845 | -1.548 |
| BL6a | -0.717 | -0.756 |
| BXD01 | -0.729 | -1.326 |
| BXD010 | -1.645 | -1.676 |
| BXD011 | -1.096 | 0.027 |
| BXD03 | 0.034 | -1.77 |
| BXD04 | -0.747 | -1.259 |
| BXD05 | -1.729 | -0.812 |
| BXD06 | -1.149 | -1.436 |
| BXD07 | -0.404 | -0.809 |
| BXD08 | 0.506 | -0.549 |
| BXD09 | -0.787 | -1.143 |
| CAST | 1.034 | -1.39 |
| CCcont | -2.053 | -1.479 |
| DS01 | -0.941 | 0.541 |
| DS02 | 0.262 | 0.859 |
| DS04 | 0.632 | 1.427 |
| DS0c | -0.424 | 0.046 |
| GP01 | -1.456 | 0.531 |
| GP02 | -1.227 | -1.576 |
| GP0c | -1.918 | -0.381 |
| NOD | -1.357 | -0.724 |
| NZO | -1.032 | -1.623 |
| PWK | -0.641 | 0.432 |
| H37Rv_KO_CtpC | -0.91 | -1.522 |
| H37Rv_KO_CtpD | -1.868 | 0.573 |
| H37Rv_KO_Rv1272 | -2.08 | -0.773 |
| H37Rv_KO_SugABC | 0.073 | -1.335 |
| H37Rv_KO_MbtN | 2.325 | -1.826 |
| Trans05 | -1.927 | -2.563 |
| macrophage_unactivated | 2.172 | -0.347 |
| IL1 | 3.085 | 1.385 |
| Rapamycin | 4.155 | 0.064 |
| Tcell | 2.401 | 0.821 |
| GMCSF | -0.958 | -0.055 |
| IFNab | 2.899 | 0.653 |
| IFNg | 0.406 | 0.673 |
| IFNg_GMCSF1 | 1.112 | 0.503 |
| Rv1432_day32 | 0.0 | -0.322 |
| Rv1565c_day32 | -0.463 | 0.924 |
| secA2_input | 5.737 | 0.0 |
| delta_Rv3594 | 4.958 | 1.825 |
| delta_Rv3717 | 2.388 | 1.538 |
| delta_Rv3811 | 2.543 | 2.066 |
| delta_Rv0954 | 3.1 | 2.374 |
| PonA1 | 2.345 | 3.382 |
| EccD1_KO | 1.227 | -1.184 |
| EspI_KO | -2.165 | -0.054 |
| PE35_KO | -0.618 | 0.055 |
| PPE68_KO | -0.214 | -1.389 |
| glycerol2 | -1.136 | -1.345 |
| lignocerate | -1.566 | -1.729 |
| oleate | 0.081 | -0.519 |
| phosphatidylcholine | -0.749 | -1.62 |
| acetate | -2.138 | -2.613 |
| glucAc | -3.434 | -1.71 |
| Rv0950ko | 1.016 | -1.152 |
| Rv1096ko | 2.901 | 0.232 |
| Rv3684ko | -0.524 | -0.848 |
| delta_otsA_trehalose | 1.783 | -0.106 |