TnSeqCorr

Top 10 genes with highest correlation to Rv1954A/-:

update plotcorrelationlink to info on gene
Rv1954c/- (cc=0.6871) info on Rv1954c/-
Rv2040c/- (cc=0.5504) info on Rv2040c/-
Rv2562/- (cc=0.5253) info on Rv2562/-
Rv3166c/- (cc=0.5018) info on Rv3166c/-
Rv1088/PE9 (cc=0.4774) info on Rv1088/PE9
Rv1580c/- (cc=0.4723) info on Rv1580c/-
Rv1561/vapC11 (cc=0.4606) info on Rv1561/vapC11
Rv1508A/- (cc=0.4324) info on Rv1508A/-
Rv1583c/- (cc=0.4282) info on Rv1583c/-
Rv2481c/- (cc=0.4281) info on Rv2481c/-

Correlation of Rv1954A/- with Rv1508A/-

Normalized LFCs for Rv1954A/-:
(description and provenance of datasets)
Rv1954A/-Rv1508A/-
Fe_supp_jason_reseq

-0.051

0.608

low_pH_jason_reseq

-0.878

0.279

NO_jason_reseq

0.795

0.116

B6_jason_reseq

-1.023

-0.172

MHCII_jason_reseq

-0.98

-0.921

Isoniazid02

0.162

-0.662

Rifampicin4

0.699

-0.36

Ethambutol3

-0.047

1.415

Meropenem3

0.236

-0.252

Vancomycin16

0.034

-0.48

Rv2680_day32

0.267

-0.352

H37Rv_KO_MarP

0.679

0.509

hypoxia_3wks

-0.909

-0.921

hypoxia_6wks

-1.04

0.489

glycerol

-1.412

-0.974

cholesterol

-1.382

-0.19

AJ

-0.906

0.36

Bibs02

-0.631

-1.407

Bibs02c

-0.423

0.243

BL6

1.662

0.497

BL6a

0.082

-0.07

BXD01

-0.17

0.131

BXD010

0.235

0.31

BXD011

0.376

-0.3

BXD03

1.021

0.418

BXD04

0.345

0.011

BXD05

1.009

-0.331

BXD06

0.464

0.046

BXD07

0.734

-0.223

BXD08

0.663

-0.122

BXD09

0.683

0.185

CAST

-0.352

0.475

CCcont

-0.105

-0.21

DS01

-0.441

0.0

DS02

-0.199

-0.584

DS04

0.049

-0.178

DS0c

-0.137

-0.097

GP01

-0.69

0.68

GP02

0.515

0.084

GP0c

-0.193

0.182

NOD

-0.351

-0.02

NZO

-1.113

-0.751

PWK

-0.756

-0.217

H37Rv_KO_CtpC

-0.545

0.201

H37Rv_KO_CtpD

-0.004

1.846

H37Rv_KO_Rv1272

1.449

1.664

H37Rv_KO_SugABC

-2.115

-1.846

H37Rv_KO_MbtN

-1.266

-0.266

Trans05

0.628

0.788

macrophage_unactivated

-0.174

0.385

IL1

-0.065

-0.742

Rapamycin

0.7

0.117

Tcell

0.414

0.283

GMCSF

0.121

-0.069

IFNab

0.78

-0.363

IFNg

0.123

-0.548

IFNg_GMCSF1

1.084

-0.204

Rv1432_day32

0.746

0.811

Rv1565c_day32

-0.839

-0.55

secA2_input

-1.506

-0.612

delta_Rv3594

0.021

-1.848

delta_Rv3717

0.461

-1.063

delta_Rv3811

-0.32

-0.842

delta_Rv0954

-0.605

-1.008

PonA1

-0.433

-0.374

EccD1_KO

0.135

0.118

EspI_KO

0.713

-0.519

PE35_KO

0.12

1.038

PPE68_KO

0.32

1.107

glycerol2

-0.046

-0.113

lignocerate

0.557

0.138

oleate

-0.437

-0.155

phosphatidylcholine

0.246

0.322

acetate

0.256

0.086

glucAc

0.797

0.166

Rv0950ko

-0.326

-0.163

Rv1096ko

-0.745

-1.019

Rv3684ko

-1.896

-0.684

delta_otsA_trehalose

-1.174

-2.369