Top 10 genes with highest correlation to Rv1954A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1954c/- | (cc=0.6871) | info on Rv1954c/- |
| Rv2040c/- | (cc=0.5504) | info on Rv2040c/- |
| Rv2562/- | (cc=0.5253) | info on Rv2562/- |
| Rv3166c/- | (cc=0.5018) | info on Rv3166c/- |
| Rv1088/PE9 | (cc=0.4774) | info on Rv1088/PE9 |
| Rv1580c/- | (cc=0.4723) | info on Rv1580c/- |
| Rv1561/vapC11 | (cc=0.4606) | info on Rv1561/vapC11 |
| Rv1508A/- | (cc=0.4324) | info on Rv1508A/- |
| Rv1583c/- | (cc=0.4282) | info on Rv1583c/- |
| Rv2481c/- | (cc=0.4281) | info on Rv2481c/- |
Correlation of Rv1954A/- with Rv1954c/-
Normalized LFCs for Rv1954A/-:
(description and provenance of datasets)
| Rv1954A/- | Rv1954c/- | |
| Fe_supp_jason_reseq | -0.051 | -0.147 |
| low_pH_jason_reseq | -0.878 | -0.927 |
| NO_jason_reseq | 0.795 | 0.656 |
| B6_jason_reseq | -1.023 | -0.253 |
| MHCII_jason_reseq | -0.98 | -0.123 |
| Isoniazid02 | 0.162 | -0.595 |
| Rifampicin4 | 0.699 | -0.122 |
| Ethambutol3 | -0.047 | 2.064 |
| Meropenem3 | 0.236 | -0.437 |
| Vancomycin16 | 0.034 | -0.663 |
| Rv2680_day32 | 0.267 | 0.686 |
| H37Rv_KO_MarP | 0.679 | 0.202 |
| hypoxia_3wks | -0.909 | -0.873 |
| hypoxia_6wks | -1.04 | -0.482 |
| glycerol | -1.412 | -0.36 |
| cholesterol | -1.382 | -0.96 |
| AJ | -0.906 | -0.432 |
| Bibs02 | -0.631 | -0.34 |
| Bibs02c | -0.423 | -0.655 |
| BL6 | 1.662 | 0.99 |
| BL6a | 0.082 | -0.129 |
| BXD01 | -0.17 | -0.306 |
| BXD010 | 0.235 | 0.224 |
| BXD011 | 0.376 | 0.237 |
| BXD03 | 1.021 | 0.336 |
| BXD04 | 0.345 | -0.081 |
| BXD05 | 1.009 | 0.604 |
| BXD06 | 0.464 | 0.249 |
| BXD07 | 0.734 | 0.269 |
| BXD08 | 0.663 | 0.183 |
| BXD09 | 0.683 | 0.206 |
| CAST | -0.352 | -0.609 |
| CCcont | -0.105 | -0.529 |
| DS01 | -0.441 | -0.197 |
| DS02 | -0.199 | -0.457 |
| DS04 | 0.049 | 0.25 |
| DS0c | -0.137 | -0.236 |
| GP01 | -0.69 | -0.014 |
| GP02 | 0.515 | 0.731 |
| GP0c | -0.193 | 0.152 |
| NOD | -0.351 | 1.053 |
| NZO | -1.113 | -0.598 |
| PWK | -0.756 | -0.649 |
| H37Rv_KO_CtpC | -0.545 | -0.177 |
| H37Rv_KO_CtpD | -0.004 | -0.682 |
| H37Rv_KO_Rv1272 | 1.449 | 1.088 |
| H37Rv_KO_SugABC | -2.115 | -1.919 |
| H37Rv_KO_MbtN | -1.266 | -1.354 |
| Trans05 | 0.628 | 0.499 |
| macrophage_unactivated | -0.174 | 0.641 |
| IL1 | -0.065 | -0.104 |
| Rapamycin | 0.7 | 0.092 |
| Tcell | 0.414 | -0.16 |
| GMCSF | 0.121 | -0.129 |
| IFNab | 0.78 | 0.257 |
| IFNg | 0.123 | -0.069 |
| IFNg_GMCSF1 | 1.084 | 0.481 |
| Rv1432_day32 | 0.746 | 0.45 |
| Rv1565c_day32 | -0.839 | 0.191 |
| secA2_input | -1.506 | -0.792 |
| delta_Rv3594 | 0.021 | 0.187 |
| delta_Rv3717 | 0.461 | 0.264 |
| delta_Rv3811 | -0.32 | -0.091 |
| delta_Rv0954 | -0.605 | -0.084 |
| PonA1 | -0.433 | -0.494 |
| EccD1_KO | 0.135 | 0.155 |
| EspI_KO | 0.713 | 0.388 |
| PE35_KO | 0.12 | -0.041 |
| PPE68_KO | 0.32 | 0.09 |
| glycerol2 | -0.046 | 0.364 |
| lignocerate | 0.557 | 0.416 |
| oleate | -0.437 | 0.279 |
| phosphatidylcholine | 0.246 | 0.343 |
| acetate | 0.256 | -0.047 |
| glucAc | 0.797 | 0.434 |
| Rv0950ko | -0.326 | 0.0 |
| Rv1096ko | -0.745 | -0.256 |
| Rv3684ko | -1.896 | -0.576 |
| delta_otsA_trehalose | -1.174 | -0.934 |