TnSeqCorr

Top 10 genes with highest correlation to Rv1934c/fadE17:

update plotcorrelationlink to info on gene
Rv2003c/- (cc=0.6073) info on Rv2003c/-
Rv1736c/narX (cc=0.5278) info on Rv1736c/narX
Rv0836c/- (cc=0.5148) info on Rv0836c/-
Rv2755c/hsdS.1 (cc=0.512) info on Rv2755c/hsdS.1
Rv2490c/PE_PGRS43 (cc=0.4893) info on Rv2490c/PE_PGRS43
Rv1940/ribA1 (cc=0.485) info on Rv1940/ribA1
Rv1030/kdpB (cc=0.4792) info on Rv1030/kdpB
Rv0614/- (cc=0.4783) info on Rv0614/-
Rv1138c/- (cc=0.464) info on Rv1138c/-
Rv0419/lpqM (cc=0.4619) info on Rv0419/lpqM

Correlation of Rv1934c/fadE17 with Rv2003c/-

Normalized LFCs for Rv1934c/fadE17:
(description and provenance of datasets)
Rv1934c/fadE17Rv2003c/-
Fe_supp_jason_reseq

0.311

-0.644

low_pH_jason_reseq

-0.217

-0.683

NO_jason_reseq

-0.134

0.958

B6_jason_reseq

1.089

0.567

MHCII_jason_reseq

1.165

1.288

Isoniazid02

0.46

1.48

Rifampicin4

0.65

0.59

Ethambutol3

1.751

1.445

Meropenem3

0.574

0.328

Vancomycin16

0.236

0.942

Rv2680_day32

0.938

0.46

H37Rv_KO_MarP

0.016

0.428

hypoxia_3wks

0.0

-0.411

hypoxia_6wks

-0.025

-0.106

glycerol

0.584

0.054

cholesterol

-0.513

0.026

AJ

-0.109

0.94

Bibs02

0.115

-0.409

Bibs02c

0.432

0.465

BL6

-0.614

-0.479

BL6a

-0.232

-1.164

BXD01

0.517

-0.808

BXD010

-0.299

-1.305

BXD011

-0.405

-1.822

BXD03

-0.737

-1.378

BXD04

-1.165

-1.683

BXD05

-1.203

-0.57

BXD06

-0.237

-1.648

BXD07

-0.334

-0.978

BXD08

-0.963

-1.014

BXD09

-0.351

-0.397

CAST

0.06

-1.208

CCcont

-1.162

-1.286

DS01

0.178

0.436

DS02

0.23

0.562

DS04

0.159

0.25

DS0c

0.437

-0.187

GP01

0.938

1.201

GP02

1.959

0.316

GP0c

0.025

0.104

NOD

-0.264

-0.635

NZO

-1.319

-0.172

PWK

-0.259

-0.395

H37Rv_KO_CtpC

-0.621

-0.479

H37Rv_KO_CtpD

-0.791

-1.419

H37Rv_KO_Rv1272

-0.933

-0.761

H37Rv_KO_SugABC

-0.705

-1.911

H37Rv_KO_MbtN

1.247

0.859

Trans05

0.235

0.093

macrophage_unactivated

-0.294

-0.675

IL1

0.089

0.421

Rapamycin

0.838

0.957

Tcell

0.0

0.313

GMCSF

2.265

0.605

IFNab

-0.481

0.076

IFNg

-0.38

-0.73

IFNg_GMCSF1

0.185

0.229

Rv1432_day32

0.216

0.052

Rv1565c_day32

0.396

0.126

secA2_input

-1.581

-0.46

delta_Rv3594

0.889

0.433

delta_Rv3717

0.201

0.306

delta_Rv3811

0.131

0.696

delta_Rv0954

-0.433

-1.058

PonA1

0.65

-1.27

EccD1_KO

0.22

-1.769

EspI_KO

-1.109

-0.137

PE35_KO

0.099

-0.513

PPE68_KO

0.282

-0.477

glycerol2

0.696

0.771

lignocerate

0.195

0.582

oleate

1.106

0.072

phosphatidylcholine

0.934

1.003

acetate

0.136

1.242

glucAc

-0.247

0.923

Rv0950ko

0.398

-0.703

Rv1096ko

1.819

1.134

Rv3684ko

1.824

1.605

delta_otsA_trehalose

-1.741

-0.765