Top 10 genes with highest correlation to Rv1898/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0586/mce2R | (cc=0.3823) | info on Rv0586/mce2R |
| Rv3645/- | (cc=0.3806) | info on Rv3645/- |
| Rv0592/mce2D | (cc=0.3774) | info on Rv0592/mce2D |
| Rv3043c/ctaD | (cc=0.371) | info on Rv3043c/ctaD |
| Rv0266c/oplA | (cc=0.3701) | info on Rv0266c/oplA |
| Rv0080/- | (cc=0.3553) | info on Rv0080/- |
| Rv0701/rplC | (cc=0.3551) | info on Rv0701/rplC |
| Rv0460/- | (cc=0.3519) | info on Rv0460/- |
| Rv2896c/- | (cc=0.3449) | info on Rv2896c/- |
| Rv2771c/- | (cc=0.3441) | info on Rv2771c/- |
Correlation of Rv1898/- with Rv0586/mce2R
Normalized LFCs for Rv1898/-:
(description and provenance of datasets)
| Rv1898/- | Rv0586/mce2R | |
| Fe_supp_jason_reseq | 1.242 | 0.147 |
| low_pH_jason_reseq | 0.539 | -0.391 |
| NO_jason_reseq | 1.494 | 0.895 |
| B6_jason_reseq | 0.895 | -0.229 |
| MHCII_jason_reseq | -0.583 | 0.749 |
| Isoniazid02 | -0.323 | -0.422 |
| Rifampicin4 | -0.712 | -1.584 |
| Ethambutol3 | -0.91 | -0.109 |
| Meropenem3 | -0.581 | 0.0 |
| Vancomycin16 | -0.485 | -0.366 |
| Rv2680_day32 | -0.785 | -0.803 |
| H37Rv_KO_MarP | -0.325 | 0.162 |
| hypoxia_3wks | -1.049 | 0.486 |
| hypoxia_6wks | 1.409 | 0.564 |
| glycerol | 0.322 | -0.693 |
| cholesterol | 0.395 | 0.531 |
| AJ | 0.787 | 0.884 |
| Bibs02 | 0.393 | 0.898 |
| Bibs02c | -0.394 | -0.781 |
| BL6 | 0.748 | -1.198 |
| BL6a | -0.172 | 0.082 |
| BXD01 | -1.033 | -1.181 |
| BXD010 | -1.773 | -1.162 |
| BXD011 | -1.435 | -0.475 |
| BXD03 | 0.803 | 0.393 |
| BXD04 | 0.034 | 0.124 |
| BXD05 | 0.234 | 0.233 |
| BXD06 | 0.409 | -0.086 |
| BXD07 | -0.095 | -0.558 |
| BXD08 | -0.008 | 0.23 |
| BXD09 | -0.139 | 0.166 |
| CAST | 0.587 | 0.185 |
| CCcont | -1.564 | -1.212 |
| DS01 | 1.297 | 0.57 |
| DS02 | 0.674 | 0.665 |
| DS04 | 1.141 | -0.61 |
| DS0c | 1.013 | 0.663 |
| GP01 | -0.455 | -0.998 |
| GP02 | 0.802 | -1.171 |
| GP0c | -0.511 | -0.269 |
| NOD | 0.651 | -0.644 |
| NZO | -0.498 | -0.413 |
| PWK | -0.853 | 0.831 |
| H37Rv_KO_CtpC | 0.139 | -1.11 |
| H37Rv_KO_CtpD | 1.473 | -0.865 |
| H37Rv_KO_Rv1272 | -1.006 | -1.022 |
| H37Rv_KO_SugABC | -2.429 | -1.394 |
| H37Rv_KO_MbtN | -0.053 | -0.791 |
| Trans05 | -0.422 | -1.185 |
| macrophage_unactivated | -0.925 | -0.915 |
| IL1 | 0.635 | 0.374 |
| Rapamycin | 0.138 | -0.135 |
| Tcell | 0.326 | 0.411 |
| GMCSF | -1.381 | -1.212 |
| IFNab | 0.239 | -0.133 |
| IFNg | 0.267 | 0.743 |
| IFNg_GMCSF1 | 1.577 | 0.0 |
| Rv1432_day32 | 0.0 | -0.113 |
| Rv1565c_day32 | 0.0 | 0.746 |
| secA2_input | 2.445 | 0.0 |
| delta_Rv3594 | -0.269 | 1.078 |
| delta_Rv3717 | -1.963 | -0.214 |
| delta_Rv3811 | -1.023 | 0.617 |
| delta_Rv0954 | 0.479 | -1.362 |
| PonA1 | -0.661 | -1.217 |
| EccD1_KO | -2.029 | -1.204 |
| EspI_KO | -0.83 | -0.371 |
| PE35_KO | -0.265 | -1.359 |
| PPE68_KO | -1.133 | -0.969 |
| glycerol2 | -1.048 | 0.581 |
| lignocerate | -0.438 | 0.505 |
| oleate | -0.343 | -0.634 |
| phosphatidylcholine | -0.704 | 0.13 |
| acetate | 0.618 | 0.919 |
| glucAc | 0.434 | 0.93 |
| Rv0950ko | -0.048 | -0.311 |
| Rv1096ko | -0.443 | 0.881 |
| Rv3684ko | 1.398 | 1.15 |
| delta_otsA_trehalose | 1.159 | -0.05 |