Top 10 genes with highest correlation to Rv1871c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2722/- | (cc=0.6053) | info on Rv2722/- |
| Rv1920/- | (cc=0.5532) | info on Rv1920/- |
| Rv1816/- | (cc=0.5521) | info on Rv1816/- |
| Rv1949c/- | (cc=0.5509) | info on Rv1949c/- |
| Rv1582c/- | (cc=0.5457) | info on Rv1582c/- |
| Rv1978/- | (cc=0.5423) | info on Rv1978/- |
| Rv1787/PPE25 | (cc=0.5409) | info on Rv1787/PPE25 |
| Rv1521/fadD25 | (cc=0.5377) | info on Rv1521/fadD25 |
| Rv2510c/- | (cc=0.534) | info on Rv2510c/- |
| Rv1548c/PPE21 | (cc=0.5304) | info on Rv1548c/PPE21 |
Correlation of Rv1871c/- with Rv2722/-
Normalized LFCs for Rv1871c/-:
(description and provenance of datasets)
| Rv1871c/- | Rv2722/- | |
| Fe_supp_jason_reseq | -0.912 | -2.115 |
| low_pH_jason_reseq | -0.53 | 0.038 |
| NO_jason_reseq | 0.473 | 2.659 |
| B6_jason_reseq | -1.258 | -1.441 |
| MHCII_jason_reseq | -1.425 | -2.043 |
| Isoniazid02 | 1.439 | 0.987 |
| Rifampicin4 | 0.479 | 2.588 |
| Ethambutol3 | 0.428 | 0.795 |
| Meropenem3 | 0.461 | 0.834 |
| Vancomycin16 | 0.456 | -0.05 |
| Rv2680_day32 | -0.682 | -2.163 |
| H37Rv_KO_MarP | -0.285 | 0.296 |
| hypoxia_3wks | 0.75 | 1.435 |
| hypoxia_6wks | 0.073 | 3.282 |
| glycerol | -0.992 | -0.75 |
| cholesterol | -0.324 | -0.609 |
| AJ | -0.239 | -0.514 |
| Bibs02 | -0.36 | -0.824 |
| Bibs02c | -1.199 | -0.174 |
| BL6 | -0.055 | 1.918 |
| BL6a | -0.277 | 0.248 |
| BXD01 | -0.095 | 0.472 |
| BXD010 | 0.395 | 1.281 |
| BXD011 | 0.603 | 0.514 |
| BXD03 | -0.029 | 0.782 |
| BXD04 | -0.269 | 0.226 |
| BXD05 | 0.71 | 1.563 |
| BXD06 | 0.057 | 1.39 |
| BXD07 | 0.007 | 0.206 |
| BXD08 | 0.157 | 0.378 |
| BXD09 | -0.145 | 0.555 |
| CAST | 0.37 | -0.549 |
| CCcont | -0.471 | -0.719 |
| DS01 | -0.039 | 0.181 |
| DS02 | -0.501 | -0.31 |
| DS04 | -0.177 | -1.268 |
| DS0c | -0.277 | 0.14 |
| GP01 | 1.05 | 1.792 |
| GP02 | 0.11 | 0.369 |
| GP0c | 0.703 | 1.513 |
| NOD | 0.485 | 0.521 |
| NZO | -0.688 | -0.526 |
| PWK | -0.604 | -0.094 |
| H37Rv_KO_CtpC | 0.112 | 0.0 |
| H37Rv_KO_CtpD | 0.495 | 0.959 |
| H37Rv_KO_Rv1272 | 0.893 | -0.695 |
| H37Rv_KO_SugABC | 0.349 | 0.486 |
| H37Rv_KO_MbtN | 1.584 | 1.012 |
| Trans05 | 0.698 | 1.203 |
| macrophage_unactivated | 0.625 | -0.057 |
| IL1 | -0.403 | 0.133 |
| Rapamycin | 0.476 | -0.172 |
| Tcell | -0.345 | -0.573 |
| GMCSF | 0.869 | -0.251 |
| IFNab | 0.686 | 0.269 |
| IFNg | -0.168 | -0.668 |
| IFNg_GMCSF1 | 0.292 | 1.166 |
| Rv1432_day32 | -0.485 | 0.159 |
| Rv1565c_day32 | -0.009 | 0.663 |
| secA2_input | -0.994 | -1.991 |
| delta_Rv3594 | -1.137 | -1.358 |
| delta_Rv3717 | -1.158 | -1.748 |
| delta_Rv3811 | -0.758 | -1.023 |
| delta_Rv0954 | -0.908 | -0.966 |
| PonA1 | -1.138 | -1.863 |
| EccD1_KO | -0.306 | 1.003 |
| EspI_KO | 0.915 | -0.408 |
| PE35_KO | -0.184 | 1.006 |
| PPE68_KO | -0.074 | 1.062 |
| glycerol2 | 0.265 | -0.153 |
| lignocerate | -0.578 | -0.275 |
| oleate | 0.698 | 2.768 |
| phosphatidylcholine | 0.37 | -0.734 |
| acetate | -0.836 | 1.327 |
| glucAc | -1.325 | 0.144 |
| Rv0950ko | -0.874 | -0.525 |
| Rv1096ko | -1.378 | -1.282 |
| Rv3684ko | -0.707 | -0.924 |
| delta_otsA_trehalose | 0.11 | 0.584 |