Top 10 genes with highest correlation to Rv1840c/PE_PGRS34:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1243c/PE_PGRS23 | (cc=0.5792) | info on Rv1243c/PE_PGRS23 |
| Rv2402/- | (cc=0.5681) | info on Rv2402/- |
| Rv0316/- | (cc=0.5653) | info on Rv0316/- |
| Rv2015c/- | (cc=0.553) | info on Rv2015c/- |
| Rv2236c/cobD | (cc=0.5462) | info on Rv2236c/cobD |
| Rv3590c/PE_PGRS58 | (cc=0.5353) | info on Rv3590c/PE_PGRS58 |
| Rv1378c/- | (cc=0.5256) | info on Rv1378c/- |
| Rv1818c/PE_PGRS33 | (cc=0.5247) | info on Rv1818c/PE_PGRS33 |
| Rv0356c/- | (cc=0.5105) | info on Rv0356c/- |
| Rv2340c/PE_PGRS39 | (cc=0.4972) | info on Rv2340c/PE_PGRS39 |
Correlation of Rv1840c/PE_PGRS34 with Rv1243c/PE_PGRS23
Normalized LFCs for Rv1840c/PE_PGRS34:
(description and provenance of datasets)
| Rv1840c/PE_PGRS34 | Rv1243c/PE_PGRS23 | |
| Fe_supp_jason_reseq | -0.601 | -0.655 |
| low_pH_jason_reseq | 0.356 | -0.264 |
| NO_jason_reseq | -0.226 | -0.415 |
| B6_jason_reseq | -0.581 | -0.422 |
| MHCII_jason_reseq | 1.132 | 0.294 |
| Isoniazid02 | 0.851 | 1.695 |
| Rifampicin4 | 1.949 | 1.015 |
| Ethambutol3 | 0.996 | 2.081 |
| Meropenem3 | 1.01 | 0.695 |
| Vancomycin16 | 0.899 | 0.963 |
| Rv2680_day32 | -0.239 | 1.351 |
| H37Rv_KO_MarP | -0.151 | 0.308 |
| hypoxia_3wks | -1.38 | -0.829 |
| hypoxia_6wks | -1.345 | -1.084 |
| glycerol | -0.085 | -0.376 |
| cholesterol | -0.49 | -0.152 |
| AJ | 0.761 | 0.402 |
| Bibs02 | 0.889 | 0.514 |
| Bibs02c | 0.687 | 0.265 |
| BL6 | -1.131 | -0.69 |
| BL6a | -0.083 | -0.354 |
| BXD01 | -0.256 | -0.503 |
| BXD010 | -0.859 | -0.584 |
| BXD011 | -1.237 | -0.822 |
| BXD03 | -1.222 | -0.177 |
| BXD04 | -0.088 | 0.163 |
| BXD05 | -0.116 | 0.157 |
| BXD06 | -1.444 | -0.386 |
| BXD07 | -0.79 | -0.547 |
| BXD08 | -0.197 | -0.276 |
| BXD09 | -0.77 | -0.693 |
| CAST | -0.304 | -0.334 |
| CCcont | -0.963 | -0.669 |
| DS01 | 0.157 | -0.455 |
| DS02 | 0.173 | 0.161 |
| DS04 | 0.713 | 0.256 |
| DS0c | 0.482 | -0.358 |
| GP01 | 0.849 | 0.463 |
| GP02 | 0.055 | 1.47 |
| GP0c | 0.23 | 0.0 |
| NOD | 0.207 | 0.215 |
| NZO | 0.027 | 0.147 |
| PWK | 0.392 | 0.415 |
| H37Rv_KO_CtpC | -0.459 | -0.384 |
| H37Rv_KO_CtpD | 0.051 | 0.801 |
| H37Rv_KO_Rv1272 | -0.708 | 0.41 |
| H37Rv_KO_SugABC | -0.864 | -0.718 |
| H37Rv_KO_MbtN | 0.455 | -1.036 |
| Trans05 | -0.193 | -0.12 |
| macrophage_unactivated | -0.186 | -0.218 |
| IL1 | -0.418 | -0.647 |
| Rapamycin | -0.181 | 0.129 |
| Tcell | -0.531 | -0.401 |
| GMCSF | 0.341 | 0.71 |
| IFNab | -1.046 | -0.429 |
| IFNg | 0.0 | -0.38 |
| IFNg_GMCSF1 | -0.314 | -0.273 |
| Rv1432_day32 | 0.103 | -0.037 |
| Rv1565c_day32 | -0.779 | -0.46 |
| secA2_input | -1.395 | -0.108 |
| delta_Rv3594 | -0.136 | -0.21 |
| delta_Rv3717 | 0.224 | 0.237 |
| delta_Rv3811 | 0.33 | -0.391 |
| delta_Rv0954 | 1.106 | -0.279 |
| PonA1 | 0.388 | 0.78 |
| EccD1_KO | 0.474 | 0.849 |
| EspI_KO | -0.411 | -0.16 |
| PE35_KO | -0.467 | -0.508 |
| PPE68_KO | 0.374 | -0.659 |
| glycerol2 | -0.65 | -0.181 |
| lignocerate | 0.426 | 0.505 |
| oleate | -1.131 | -0.608 |
| phosphatidylcholine | 0.193 | 0.13 |
| acetate | 0.973 | 0.549 |
| glucAc | 1.106 | 0.892 |
| Rv0950ko | -0.211 | -0.721 |
| Rv1096ko | -0.603 | -0.256 |
| Rv3684ko | -0.347 | -0.645 |
| delta_otsA_trehalose | 0.497 | -1.731 |