Top 10 genes with highest correlation to Rv1421/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1420/uvrC | (cc=0.7484) | info on Rv1420/uvrC |
| Rv0998/- | (cc=0.6731) | info on Rv0998/- |
| Rv2553c/- | (cc=0.6447) | info on Rv2553c/- |
| Rv3680/- | (cc=0.6354) | info on Rv3680/- |
| Rv0019c/fhaB | (cc=0.6324) | info on Rv0019c/fhaB |
| Rv0017c/rodA | (cc=0.5958) | info on Rv0017c/rodA |
| Rv1512/epiA | (cc=0.5948) | info on Rv1512/epiA |
| Rv0018c/pstP | (cc=0.5857) | info on Rv0018c/pstP |
| Rv2131c/cysQ | (cc=0.5843) | info on Rv2131c/cysQ |
| Rv0016c/pbpA | (cc=0.5841) | info on Rv0016c/pbpA |
Correlation of Rv1421/- with Rv0019c/fhaB
Normalized LFCs for Rv1421/-:
(description and provenance of datasets)
| Rv1421/- | Rv0019c/fhaB | |
| Fe_supp_jason_reseq | 1.76 | 0.89 |
| low_pH_jason_reseq | 3.244 | 0.102 |
| NO_jason_reseq | -1.864 | -1.376 |
| B6_jason_reseq | -0.189 | -0.913 |
| MHCII_jason_reseq | 1.054 | -0.603 |
| Isoniazid02 | -0.247 | 0.873 |
| Rifampicin4 | 0.355 | 2.074 |
| Ethambutol3 | -2.404 | -2.244 |
| Meropenem3 | -1.17 | -0.467 |
| Vancomycin16 | 0.565 | 3.186 |
| Rv2680_day32 | 0.0 | 1.374 |
| H37Rv_KO_MarP | -3.348 | -3.385 |
| hypoxia_3wks | 1.934 | 2.105 |
| hypoxia_6wks | 2.088 | 6.0 |
| glycerol | 2.047 | 4.817 |
| cholesterol | 1.916 | 1.407 |
| AJ | -0.232 | -0.983 |
| Bibs02 | 3.974 | -0.427 |
| Bibs02c | 1.795 | 0.0 |
| BL6 | 0.845 | 1.745 |
| BL6a | 1.934 | 1.217 |
| BXD01 | 0.0 | 2.749 |
| BXD010 | 0.0 | 2.727 |
| BXD011 | 0.412 | 2.443 |
| BXD03 | -0.135 | 0.778 |
| BXD04 | 0.312 | 2.344 |
| BXD05 | 0.768 | 2.337 |
| BXD06 | 0.523 | 2.088 |
| BXD07 | 0.712 | 2.006 |
| BXD08 | 0.121 | 1.646 |
| BXD09 | 0.0 | 2.383 |
| CAST | -0.23 | -0.976 |
| CCcont | 3.297 | 2.189 |
| DS01 | 0.595 | 0.0 |
| DS02 | 0.199 | 0.0 |
| DS04 | 2.513 | 2.087 |
| DS0c | 0.85 | -0.506 |
| GP01 | 1.767 | 2.362 |
| GP02 | 0.076 | 0.975 |
| GP0c | 0.942 | 3.464 |
| NOD | -0.225 | -0.952 |
| NZO | -0.199 | -0.845 |
| PWK | -0.196 | -0.831 |
| H37Rv_KO_CtpC | 0.739 | 1.533 |
| H37Rv_KO_CtpD | 1.454 | 0.313 |
| H37Rv_KO_Rv1272 | 0.457 | 0.693 |
| H37Rv_KO_SugABC | 1.31 | 2.794 |
| H37Rv_KO_MbtN | 1.116 | 4.57 |
| Trans05 | 0.228 | 2.521 |
| macrophage_unactivated | -0.451 | -0.685 |
| IL1 | -1.898 | 0.181 |
| Rapamycin | 0.083 | 0.046 |
| Tcell | 0.424 | 1.854 |
| GMCSF | 0.718 | -0.62 |
| IFNab | 3.105 | 1.877 |
| IFNg | -0.382 | -1.096 |
| IFNg_GMCSF1 | -0.085 | -0.572 |
| Rv1432_day32 | -0.18 | 1.385 |
| Rv1565c_day32 | 0.218 | 0.766 |
| secA2_input | -0.595 | -3.284 |
| delta_Rv3594 | 2.688 | 1.53 |
| delta_Rv3717 | 4.737 | 3.667 |
| delta_Rv3811 | 3.169 | 2.492 |
| delta_Rv0954 | 1.193 | -0.775 |
| PonA1 | -0.119 | -2.47 |
| EccD1_KO | -1.266 | -0.73 |
| EspI_KO | -1.711 | -0.967 |
| PE35_KO | -0.473 | -0.89 |
| PPE68_KO | -1.296 | -1.254 |
| glycerol2 | -2.081 | -2.176 |
| lignocerate | -1.808 | -1.476 |
| oleate | -2.105 | -2.836 |
| phosphatidylcholine | -2.08 | -2.625 |
| acetate | -0.579 | -0.055 |
| glucAc | -0.229 | 0.0 |
| Rv0950ko | -4.921 | -3.121 |
| Rv1096ko | -0.935 | 0.051 |
| Rv3684ko | -1.765 | 0.429 |
| delta_otsA_trehalose | 0.564 | 1.725 |