TnSeqCorr

Top 10 genes with highest correlation to Rv1141c/echA11:

update plotcorrelationlink to info on gene
Rv1526c/- (cc=0.5088) info on Rv1526c/-
Rv2425c/- (cc=0.488) info on Rv2425c/-
Rv3016/lpqA (cc=0.4866) info on Rv3016/lpqA
Rv1787/PPE25 (cc=0.4835) info on Rv1787/PPE25
Rv2147c/- (cc=0.4766) info on Rv2147c/-
Rv2345/- (cc=0.4695) info on Rv2345/-
Rv3190A/- (cc=0.4649) info on Rv3190A/-
Rv1000c/- (cc=0.4537) info on Rv1000c/-
Rv1981c/nrdF1 (cc=0.4511) info on Rv1981c/nrdF1
Rv2300c/- (cc=0.4476) info on Rv2300c/-

Correlation of Rv1141c/echA11 with Rv1787/PPE25

Normalized LFCs for Rv1141c/echA11:
(description and provenance of datasets)
Rv1141c/echA11Rv1787/PPE25
Fe_supp_jason_reseq

-1.143

-0.851

low_pH_jason_reseq

-1.589

-1.655

NO_jason_reseq

0.365

-0.042

B6_jason_reseq

-0.567

-1.404

MHCII_jason_reseq

-0.357

-1.249

Isoniazid02

-0.201

0.308

Rifampicin4

0.872

0.842

Ethambutol3

-0.078

0.372

Meropenem3

0.399

0.574

Vancomycin16

-0.151

-0.398

Rv2680_day32

-0.615

0.419

H37Rv_KO_MarP

0.072

-0.1

hypoxia_3wks

-0.148

0.267

hypoxia_6wks

0.104

0.0

glycerol

0.478

0.041

cholesterol

-0.485

-0.952

AJ

0.121

0.492

Bibs02

-0.152

0.221

Bibs02c

1.144

-0.029

BL6

0.694

0.067

BL6a

1.115

0.158

BXD01

0.577

0.369

BXD010

0.13

0.332

BXD011

2.406

0.413

BXD03

0.515

0.551

BXD04

0.477

0.157

BXD05

-0.083

0.695

BXD06

0.221

0.237

BXD07

0.805

0.622

BXD08

0.228

0.401

BXD09

0.496

0.435

CAST

0.582

-0.008

CCcont

0.401

0.056

DS01

-0.031

-0.476

DS02

-0.244

0.022

DS04

0.013

0.559

DS0c

0.057

0.044

GP01

1.232

0.916

GP02

0.471

1.683

GP0c

0.902

0.736

NOD

0.496

-0.039

NZO

-0.361

0.342

PWK

0.423

0.337

H37Rv_KO_CtpC

0.81

0.718

H37Rv_KO_CtpD

1.174

0.635

H37Rv_KO_Rv1272

0.686

0.769

H37Rv_KO_SugABC

1.109

0.657

H37Rv_KO_MbtN

0.806

0.831

Trans05

0.467

0.971

macrophage_unactivated

0.363

0.41

IL1

0.163

0.501

Rapamycin

0.129

-0.021

Tcell

0.837

0.632

GMCSF

0.977

1.009

IFNab

0.021

-0.577

IFNg

-0.115

1.013

IFNg_GMCSF1

0.955

0.886

Rv1432_day32

-0.292

0.394

Rv1565c_day32

0.325

-0.581

secA2_input

-0.063

0.504

delta_Rv3594

0.285

-0.171

delta_Rv3717

0.159

-0.298

delta_Rv3811

0.7

-0.228

delta_Rv0954

0.424

-0.238

PonA1

-0.504

-0.602

EccD1_KO

1.5

-0.043

EspI_KO

1.483

0.371

PE35_KO

0.718

0.327

PPE68_KO

1.488

-0.186

glycerol2

0.921

0.017

lignocerate

1.108

-0.3

oleate

1.231

0.517

phosphatidylcholine

1.325

0.353

acetate

0.545

-0.229

glucAc

0.461

-0.284

Rv0950ko

-0.353

0.323

Rv1096ko

0.103

-0.688

Rv3684ko

-0.508

-0.793

delta_otsA_trehalose

1.225

0.776