Top 10 genes with highest correlation to Rv1080c/greA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0541c/- | (cc=0.7621) | info on Rv0541c/- |
| Rv1078/pra | (cc=0.7002) | info on Rv1078/pra |
| Rv2553c/- | (cc=0.6866) | info on Rv2553c/- |
| Rv1836c/- | (cc=0.679) | info on Rv1836c/- |
| Rv2246/kasB | (cc=0.674) | info on Rv2246/kasB |
| Rv1340/rphA | (cc=0.659) | info on Rv1340/rphA |
| Rv0238/- | (cc=0.6578) | info on Rv0238/- |
| Rv1512/epiA | (cc=0.6488) | info on Rv1512/epiA |
| Rv3789/- | (cc=0.6464) | info on Rv3789/- |
| Rv2837c/- | (cc=0.6302) | info on Rv2837c/- |
Correlation of Rv1080c/greA with Rv0238/-
Normalized LFCs for Rv1080c/greA:
(description and provenance of datasets)
| Rv1080c/greA | Rv0238/- | |
| Fe_supp_jason_reseq | 1.121 | -0.583 |
| low_pH_jason_reseq | -0.231 | -1.919 |
| NO_jason_reseq | 0.633 | -2.058 |
| B6_jason_reseq | 0.267 | -1.519 |
| MHCII_jason_reseq | -0.135 | -1.595 |
| Isoniazid02 | -0.851 | -0.796 |
| Rifampicin4 | -0.271 | -0.211 |
| Ethambutol3 | 0.505 | 1.17 |
| Meropenem3 | -0.12 | 1.411 |
| Vancomycin16 | -0.546 | 0.562 |
| Rv2680_day32 | 0.0 | 0.131 |
| H37Rv_KO_MarP | -2.138 | 1.25 |
| hypoxia_3wks | -0.55 | 2.125 |
| hypoxia_6wks | 0.503 | 1.831 |
| glycerol | -0.385 | 1.549 |
| cholesterol | 0.233 | 1.17 |
| AJ | 0.193 | -0.442 |
| Bibs02 | -0.167 | -0.348 |
| Bibs02c | -0.399 | -0.191 |
| BL6 | -0.114 | -0.238 |
| BL6a | 0.319 | 0.595 |
| BXD01 | -0.119 | 0.0 |
| BXD010 | 0.299 | 1.769 |
| BXD011 | 0.383 | 2.186 |
| BXD03 | -0.123 | 0.0 |
| BXD04 | 0.199 | 0.594 |
| BXD05 | 0.57 | 1.827 |
| BXD06 | 0.0 | 0.401 |
| BXD07 | 0.0 | 0.115 |
| BXD08 | 0.111 | 0.111 |
| BXD09 | 0.117 | 2.036 |
| CAST | -0.21 | -0.21 |
| CCcont | 1.481 | 3.213 |
| DS01 | -0.216 | -0.45 |
| DS02 | -0.414 | -0.414 |
| DS04 | 0.312 | 1.989 |
| DS0c | 0.349 | -0.413 |
| GP01 | 0.672 | -0.188 |
| GP02 | -0.159 | -0.159 |
| GP0c | 0.551 | -0.248 |
| NOD | 0.361 | 0.0 |
| NZO | 0.0 | -0.38 |
| PWK | 0.0 | -0.374 |
| H37Rv_KO_CtpC | 0.261 | 0.0 |
| H37Rv_KO_CtpD | 0.381 | -0.116 |
| H37Rv_KO_Rv1272 | -0.129 | -0.129 |
| H37Rv_KO_SugABC | 0.083 | 1.165 |
| H37Rv_KO_MbtN | 2.002 | 3.167 |
| Trans05 | 0.889 | 0.305 |
| macrophage_unactivated | 0.436 | -1.016 |
| IL1 | 0.0 | -0.955 |
| Rapamycin | 0.0 | 0.068 |
| Tcell | 0.0 | -1.235 |
| GMCSF | 0.0 | -3.958 |
| IFNab | 0.0 | 0.738 |
| IFNg | 0.0 | -3.247 |
| IFNg_GMCSF1 | 0.0 | -4.71 |
| Rv1432_day32 | 1.068 | 0.18 |
| Rv1565c_day32 | 0.218 | 0.0 |
| secA2_input | -0.348 | -1.565 |
| delta_Rv3594 | 3.356 | 3.099 |
| delta_Rv3717 | 3.97 | 3.619 |
| delta_Rv3811 | 3.554 | 3.289 |
| delta_Rv0954 | -2.225 | -2.003 |
| PonA1 | -1.428 | -2.35 |
| EccD1_KO | -3.029 | -6.0 |
| EspI_KO | -1.825 | -6.0 |
| PE35_KO | -1.747 | -3.856 |
| PPE68_KO | -0.755 | -3.663 |
| glycerol2 | 0.0 | -3.747 |
| lignocerate | 0.0 | -1.501 |
| oleate | 0.0 | 4.347 |
| phosphatidylcholine | 0.0 | -3.947 |
| acetate | 0.0 | -0.54 |
| glucAc | 0.0 | -0.215 |
| Rv0950ko | -3.35 | -6.0 |
| Rv1096ko | -1.888 | -5.54 |
| Rv3684ko | -0.655 | -2.911 |
| delta_otsA_trehalose | 0.906 | 1.902 |