Top 10 genes with highest correlation to Rv1066/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3892c/PPE69 | (cc=0.5115) | info on Rv3892c/PPE69 |
| Rv2601/speE | (cc=0.5104) | info on Rv2601/speE |
| Rv0481c/- | (cc=0.5008) | info on Rv0481c/- |
| Rv3297/nei | (cc=0.4936) | info on Rv3297/nei |
| Rv2340c/PE_PGRS39 | (cc=0.4893) | info on Rv2340c/PE_PGRS39 |
| Rv3471c/- | (cc=0.4834) | info on Rv3471c/- |
| Rv2114/- | (cc=0.4788) | info on Rv2114/- |
| Rv1840c/PE_PGRS34 | (cc=0.4705) | info on Rv1840c/PE_PGRS34 |
| Rv0621/- | (cc=0.4637) | info on Rv0621/- |
| Rv2125/- | (cc=0.4628) | info on Rv2125/- |
Correlation of Rv1066/- with Rv3297/nei
Normalized LFCs for Rv1066/-:
(description and provenance of datasets)
| Rv1066/- | Rv3297/nei | |
| Fe_supp_jason_reseq | -0.63 | -0.224 |
| low_pH_jason_reseq | -0.383 | -0.04 |
| NO_jason_reseq | -1.859 | -0.305 |
| B6_jason_reseq | -2.013 | -0.009 |
| MHCII_jason_reseq | -0.114 | 0.031 |
| Isoniazid02 | 0.038 | 0.16 |
| Rifampicin4 | 1.313 | 1.248 |
| Ethambutol3 | 0.094 | 1.927 |
| Meropenem3 | -0.272 | 0.707 |
| Vancomycin16 | 0.459 | 0.661 |
| Rv2680_day32 | -2.775 | 0.764 |
| H37Rv_KO_MarP | 0.058 | 0.178 |
| hypoxia_3wks | -1.105 | -0.566 |
| hypoxia_6wks | -2.019 | -0.319 |
| glycerol | 1.978 | 0.487 |
| cholesterol | 0.395 | 0.424 |
| AJ | -0.474 | -0.072 |
| Bibs02 | 1.542 | 0.787 |
| Bibs02c | 1.002 | -0.361 |
| BL6 | -2.113 | 0.25 |
| BL6a | -0.317 | -0.452 |
| BXD01 | -2.25 | -0.148 |
| BXD010 | -1.72 | -0.403 |
| BXD011 | -1.781 | -0.464 |
| BXD03 | -0.529 | 0.007 |
| BXD04 | -2.461 | -1.029 |
| BXD05 | -1.403 | 0.303 |
| BXD06 | -2.796 | -0.486 |
| BXD07 | -2.058 | -0.425 |
| BXD08 | -1.469 | -0.67 |
| BXD09 | -1.926 | -0.553 |
| CAST | -0.976 | 0.103 |
| CCcont | -2.22 | -0.031 |
| DS01 | 0.801 | 0.867 |
| DS02 | 0.917 | 1.065 |
| DS04 | 0.921 | 1.106 |
| DS0c | 0.185 | 1.398 |
| GP01 | -0.848 | -0.01 |
| GP02 | 0.321 | 1.55 |
| GP0c | -0.822 | -0.531 |
| NOD | 1.842 | 0.542 |
| NZO | -0.302 | -0.094 |
| PWK | 0.099 | -0.01 |
| H37Rv_KO_CtpC | -0.317 | -0.726 |
| H37Rv_KO_CtpD | -3.057 | -0.006 |
| H37Rv_KO_Rv1272 | -0.799 | -1.157 |
| H37Rv_KO_SugABC | -0.184 | -0.015 |
| H37Rv_KO_MbtN | 0.873 | 0.249 |
| Trans05 | 0.443 | 0.423 |
| macrophage_unactivated | -2.38 | -0.758 |
| IL1 | -0.759 | -0.187 |
| Rapamycin | -1.522 | -0.279 |
| Tcell | -2.457 | -0.714 |
| GMCSF | 0.256 | 0.092 |
| IFNab | 0.0 | -0.333 |
| IFNg | -2.015 | -0.168 |
| IFNg_GMCSF1 | 0.258 | 1.128 |
| Rv1432_day32 | 0.795 | 0.057 |
| Rv1565c_day32 | -2.342 | -1.829 |
| secA2_input | 0.822 | 0.676 |
| delta_Rv3594 | 1.325 | 0.061 |
| delta_Rv3717 | 0.381 | -0.273 |
| delta_Rv3811 | -2.583 | -0.174 |
| delta_Rv0954 | 0.34 | -0.063 |
| PonA1 | -0.419 | -0.328 |
| EccD1_KO | -0.405 | -0.322 |
| EspI_KO | -2.056 | -0.453 |
| PE35_KO | -1.52 | 0.108 |
| PPE68_KO | -1.059 | 0.749 |
| glycerol2 | -1.808 | -0.338 |
| lignocerate | -0.994 | 0.412 |
| oleate | -2.836 | -0.315 |
| phosphatidylcholine | -1.922 | 0.15 |
| acetate | -0.289 | 0.874 |
| glucAc | -0.903 | 0.642 |
| Rv0950ko | -0.709 | -0.371 |
| Rv1096ko | -1.291 | 0.175 |
| Rv3684ko | -2.99 | -0.131 |
| delta_otsA_trehalose | -0.564 | -1.502 |