Top 10 genes with highest correlation to Rv1066/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3892c/PPE69 | (cc=0.5115) | info on Rv3892c/PPE69 |
| Rv2601/speE | (cc=0.5104) | info on Rv2601/speE |
| Rv0481c/- | (cc=0.5008) | info on Rv0481c/- |
| Rv3297/nei | (cc=0.4936) | info on Rv3297/nei |
| Rv2340c/PE_PGRS39 | (cc=0.4893) | info on Rv2340c/PE_PGRS39 |
| Rv3471c/- | (cc=0.4834) | info on Rv3471c/- |
| Rv2114/- | (cc=0.4788) | info on Rv2114/- |
| Rv1840c/PE_PGRS34 | (cc=0.4705) | info on Rv1840c/PE_PGRS34 |
| Rv0621/- | (cc=0.4637) | info on Rv0621/- |
| Rv2125/- | (cc=0.4628) | info on Rv2125/- |
Correlation of Rv1066/- with Rv3892c/PPE69
Normalized LFCs for Rv1066/-:
(description and provenance of datasets)
| Rv1066/- | Rv3892c/PPE69 | |
| Fe_supp_jason_reseq | -0.63 | 0.262 |
| low_pH_jason_reseq | -0.383 | -0.467 |
| NO_jason_reseq | -1.859 | -1.601 |
| B6_jason_reseq | -2.013 | 0.094 |
| MHCII_jason_reseq | -0.114 | -0.108 |
| Isoniazid02 | 0.038 | 2.267 |
| Rifampicin4 | 1.313 | 0.723 |
| Ethambutol3 | 0.094 | 2.274 |
| Meropenem3 | -0.272 | -0.126 |
| Vancomycin16 | 0.459 | 0.058 |
| Rv2680_day32 | -2.775 | -1.335 |
| H37Rv_KO_MarP | 0.058 | 0.555 |
| hypoxia_3wks | -1.105 | -0.658 |
| hypoxia_6wks | -2.019 | -0.912 |
| glycerol | 1.978 | 0.257 |
| cholesterol | 0.395 | 0.441 |
| AJ | -0.474 | 1.385 |
| Bibs02 | 1.542 | 0.911 |
| Bibs02c | 1.002 | 0.453 |
| BL6 | -2.113 | -0.247 |
| BL6a | -0.317 | 0.143 |
| BXD01 | -2.25 | -0.973 |
| BXD010 | -1.72 | -0.253 |
| BXD011 | -1.781 | -0.23 |
| BXD03 | -0.529 | 0.108 |
| BXD04 | -2.461 | 0.019 |
| BXD05 | -1.403 | -0.161 |
| BXD06 | -2.796 | -1.104 |
| BXD07 | -2.058 | -0.781 |
| BXD08 | -1.469 | 0.288 |
| BXD09 | -1.926 | -0.331 |
| CAST | -0.976 | 1.049 |
| CCcont | -2.22 | -0.578 |
| DS01 | 0.801 | 0.898 |
| DS02 | 0.917 | 1.054 |
| DS04 | 0.921 | 1.703 |
| DS0c | 0.185 | 1.092 |
| GP01 | -0.848 | 0.3 |
| GP02 | 0.321 | 0.482 |
| GP0c | -0.822 | -0.222 |
| NOD | 1.842 | 0.083 |
| NZO | -0.302 | 0.159 |
| PWK | 0.099 | 0.196 |
| H37Rv_KO_CtpC | -0.317 | 0.107 |
| H37Rv_KO_CtpD | -3.057 | 0.32 |
| H37Rv_KO_Rv1272 | -0.799 | 0.774 |
| H37Rv_KO_SugABC | -0.184 | -0.474 |
| H37Rv_KO_MbtN | 0.873 | -0.023 |
| Trans05 | 0.443 | 0.449 |
| macrophage_unactivated | -2.38 | -1.449 |
| IL1 | -0.759 | 0.341 |
| Rapamycin | -1.522 | -0.068 |
| Tcell | -2.457 | -0.45 |
| GMCSF | 0.256 | 0.058 |
| IFNab | 0.0 | -0.345 |
| IFNg | -2.015 | -0.029 |
| IFNg_GMCSF1 | 0.258 | -0.321 |
| Rv1432_day32 | 0.795 | -0.107 |
| Rv1565c_day32 | -2.342 | -0.959 |
| secA2_input | 0.822 | 0.653 |
| delta_Rv3594 | 1.325 | -0.291 |
| delta_Rv3717 | 0.381 | 0.283 |
| delta_Rv3811 | -2.583 | -0.269 |
| delta_Rv0954 | 0.34 | 0.77 |
| PonA1 | -0.419 | -0.241 |
| EccD1_KO | -0.405 | -0.372 |
| EspI_KO | -2.056 | -0.414 |
| PE35_KO | -1.52 | -0.764 |
| PPE68_KO | -1.059 | -0.214 |
| glycerol2 | -1.808 | 0.412 |
| lignocerate | -0.994 | 0.06 |
| oleate | -2.836 | 0.597 |
| phosphatidylcholine | -1.922 | 0.069 |
| acetate | -0.289 | 0.02 |
| glucAc | -0.903 | -0.762 |
| Rv0950ko | -0.709 | -0.106 |
| Rv1096ko | -1.291 | 0.0 |
| Rv3684ko | -2.99 | -0.609 |
| delta_otsA_trehalose | -0.564 | 1.319 |