Top 10 genes with highest correlation to Rv1040c/PE8:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2141c/- | (cc=0.5422) | info on Rv2141c/- |
| Rv3655c/- | (cc=0.5327) | info on Rv3655c/- |
| Rv3585/radA | (cc=0.5113) | info on Rv3585/radA |
| Rv2149c/yfiH | (cc=0.4961) | info on Rv2149c/yfiH |
| Rv2872/vapC43 | (cc=0.4961) | info on Rv2872/vapC43 |
| Rv3056/dinP | (cc=0.4883) | info on Rv3056/dinP |
| Rv1965/yrbE3B | (cc=0.4837) | info on Rv1965/yrbE3B |
| Rv0650/- | (cc=0.4687) | info on Rv0650/- |
| Rv3736/- | (cc=0.4636) | info on Rv3736/- |
| Rv3777/- | (cc=0.4604) | info on Rv3777/- |
Correlation of Rv1040c/PE8 with Rv3655c/-
Normalized LFCs for Rv1040c/PE8:
(description and provenance of datasets)
| Rv1040c/PE8 | Rv3655c/- | |
| Fe_supp_jason_reseq | -0.418 | 0.425 |
| low_pH_jason_reseq | -1.323 | -1.049 |
| NO_jason_reseq | -0.995 | -0.604 |
| B6_jason_reseq | -0.239 | 1.205 |
| MHCII_jason_reseq | 0.017 | 2.276 |
| Isoniazid02 | 1.368 | 0.335 |
| Rifampicin4 | 0.0 | 0.382 |
| Ethambutol3 | 2.203 | 5.673 |
| Meropenem3 | 0.519 | 0.092 |
| Vancomycin16 | -0.225 | 0.061 |
| Rv2680_day32 | -1.362 | -1.416 |
| H37Rv_KO_MarP | 0.178 | -0.591 |
| hypoxia_3wks | -0.108 | -1.033 |
| hypoxia_6wks | -0.434 | -0.804 |
| glycerol | -0.377 | -0.284 |
| cholesterol | -0.641 | -0.588 |
| AJ | 0.773 | 0.407 |
| Bibs02 | 0.31 | 1.009 |
| Bibs02c | 0.882 | 1.447 |
| BL6 | -1.159 | -3.974 |
| BL6a | 0.768 | -0.238 |
| BXD01 | -0.214 | -1.472 |
| BXD010 | -0.067 | -1.256 |
| BXD011 | -0.328 | -0.233 |
| BXD03 | -0.722 | -0.862 |
| BXD04 | -0.15 | -1.781 |
| BXD05 | -0.57 | -0.792 |
| BXD06 | -0.504 | -1.621 |
| BXD07 | -0.312 | -0.906 |
| BXD08 | -0.478 | -1.735 |
| BXD09 | 0.044 | -0.956 |
| CAST | 0.365 | -0.36 |
| CCcont | -0.661 | -3.528 |
| DS01 | 0.173 | 1.646 |
| DS02 | 0.38 | 1.742 |
| DS04 | -0.564 | 0.625 |
| DS0c | 0.234 | 1.009 |
| GP01 | 0.084 | -1.353 |
| GP02 | -0.734 | -1.112 |
| GP0c | 0.469 | -2.31 |
| NOD | 0.332 | -0.316 |
| NZO | -0.283 | 0.036 |
| PWK | 0.267 | 0.753 |
| H37Rv_KO_CtpC | -0.267 | -1.221 |
| H37Rv_KO_CtpD | 0.813 | 0.864 |
| H37Rv_KO_Rv1272 | 0.939 | -0.353 |
| H37Rv_KO_SugABC | 0.101 | -1.391 |
| H37Rv_KO_MbtN | -1.64 | -1.688 |
| Trans05 | -0.423 | -0.935 |
| macrophage_unactivated | 0.568 | -0.451 |
| IL1 | -1.014 | -1.258 |
| Rapamycin | 0.583 | -1.415 |
| Tcell | -0.111 | -0.821 |
| GMCSF | -0.409 | -0.539 |
| IFNab | 0.36 | -0.254 |
| IFNg | -0.184 | -0.762 |
| IFNg_GMCSF1 | 0.405 | 0.487 |
| Rv1432_day32 | 0.095 | 0.484 |
| Rv1565c_day32 | 0.588 | -0.122 |
| secA2_input | 1.41 | 0.999 |
| delta_Rv3594 | 0.262 | 0.08 |
| delta_Rv3717 | 0.419 | -0.405 |
| delta_Rv3811 | -0.306 | -0.033 |
| delta_Rv0954 | -0.114 | -0.114 |
| PonA1 | 0.743 | -2.026 |
| EccD1_KO | 1.612 | 0.0 |
| EspI_KO | 0.844 | -1.252 |
| PE35_KO | 0.032 | 0.315 |
| PPE68_KO | 0.544 | 0.406 |
| glycerol2 | 0.489 | -1.739 |
| lignocerate | 0.196 | -1.913 |
| oleate | 0.464 | -0.413 |
| phosphatidylcholine | 0.576 | -1.48 |
| acetate | -0.352 | -0.916 |
| glucAc | -0.451 | -2.888 |
| Rv0950ko | 0.1 | 2.234 |
| Rv1096ko | 1.056 | 2.702 |
| Rv3684ko | 1.176 | 2.869 |
| delta_otsA_trehalose | -0.534 | -0.27 |