Top 10 genes with highest correlation to Rv1040c/PE8:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2141c/- | (cc=0.5422) | info on Rv2141c/- |
| Rv3655c/- | (cc=0.5327) | info on Rv3655c/- |
| Rv3585/radA | (cc=0.5113) | info on Rv3585/radA |
| Rv2149c/yfiH | (cc=0.4961) | info on Rv2149c/yfiH |
| Rv2872/vapC43 | (cc=0.4961) | info on Rv2872/vapC43 |
| Rv3056/dinP | (cc=0.4883) | info on Rv3056/dinP |
| Rv1965/yrbE3B | (cc=0.4837) | info on Rv1965/yrbE3B |
| Rv0650/- | (cc=0.4687) | info on Rv0650/- |
| Rv3736/- | (cc=0.4636) | info on Rv3736/- |
| Rv3777/- | (cc=0.4604) | info on Rv3777/- |
Correlation of Rv1040c/PE8 with Rv2141c/-
Normalized LFCs for Rv1040c/PE8:
(description and provenance of datasets)
| Rv1040c/PE8 | Rv2141c/- | |
| Fe_supp_jason_reseq | -0.418 | -0.224 |
| low_pH_jason_reseq | -1.323 | -1.116 |
| NO_jason_reseq | -0.995 | -3.187 |
| B6_jason_reseq | -0.239 | -0.399 |
| MHCII_jason_reseq | 0.017 | 0.112 |
| Isoniazid02 | 1.368 | 0.802 |
| Rifampicin4 | 0.0 | 0.341 |
| Ethambutol3 | 2.203 | 1.085 |
| Meropenem3 | 0.519 | 0.208 |
| Vancomycin16 | -0.225 | 0.276 |
| Rv2680_day32 | -1.362 | -1.012 |
| H37Rv_KO_MarP | 0.178 | 0.278 |
| hypoxia_3wks | -0.108 | -0.722 |
| hypoxia_6wks | -0.434 | -0.24 |
| glycerol | -0.377 | 0.489 |
| cholesterol | -0.641 | -0.556 |
| AJ | 0.773 | -0.013 |
| Bibs02 | 0.31 | -0.266 |
| Bibs02c | 0.882 | 0.534 |
| BL6 | -1.159 | -0.106 |
| BL6a | 0.768 | 0.043 |
| BXD01 | -0.214 | -0.972 |
| BXD010 | -0.067 | -0.313 |
| BXD011 | -0.328 | -1.287 |
| BXD03 | -0.722 | -0.652 |
| BXD04 | -0.15 | 0.072 |
| BXD05 | -0.57 | -1.419 |
| BXD06 | -0.504 | -0.803 |
| BXD07 | -0.312 | -1.18 |
| BXD08 | -0.478 | -0.532 |
| BXD09 | 0.044 | -0.678 |
| CAST | 0.365 | -0.611 |
| CCcont | -0.661 | -0.609 |
| DS01 | 0.173 | 0.631 |
| DS02 | 0.38 | -0.134 |
| DS04 | -0.564 | -0.097 |
| DS0c | 0.234 | 0.911 |
| GP01 | 0.084 | -0.084 |
| GP02 | -0.734 | -0.63 |
| GP0c | 0.469 | -0.583 |
| NOD | 0.332 | -0.327 |
| NZO | -0.283 | -0.487 |
| PWK | 0.267 | 0.193 |
| H37Rv_KO_CtpC | -0.267 | -0.247 |
| H37Rv_KO_CtpD | 0.813 | -0.233 |
| H37Rv_KO_Rv1272 | 0.939 | 0.207 |
| H37Rv_KO_SugABC | 0.101 | 0.788 |
| H37Rv_KO_MbtN | -1.64 | -0.317 |
| Trans05 | -0.423 | -0.073 |
| macrophage_unactivated | 0.568 | -0.439 |
| IL1 | -1.014 | -0.543 |
| Rapamycin | 0.583 | -0.252 |
| Tcell | -0.111 | 0.251 |
| GMCSF | -0.409 | -0.523 |
| IFNab | 0.36 | 0.0 |
| IFNg | -0.184 | -0.914 |
| IFNg_GMCSF1 | 0.405 | -0.622 |
| Rv1432_day32 | 0.095 | -1.05 |
| Rv1565c_day32 | 0.588 | 0.234 |
| secA2_input | 1.41 | 0.834 |
| delta_Rv3594 | 0.262 | -0.196 |
| delta_Rv3717 | 0.419 | -0.593 |
| delta_Rv3811 | -0.306 | -0.412 |
| delta_Rv0954 | -0.114 | -0.062 |
| PonA1 | 0.743 | -0.397 |
| EccD1_KO | 1.612 | 0.724 |
| EspI_KO | 0.844 | 0.077 |
| PE35_KO | 0.032 | 0.058 |
| PPE68_KO | 0.544 | -0.246 |
| glycerol2 | 0.489 | 0.97 |
| lignocerate | 0.196 | -0.552 |
| oleate | 0.464 | -0.323 |
| phosphatidylcholine | 0.576 | -0.811 |
| acetate | -0.352 | 0.587 |
| glucAc | -0.451 | -0.392 |
| Rv0950ko | 0.1 | 0.579 |
| Rv1096ko | 1.056 | 0.579 |
| Rv3684ko | 1.176 | 0.472 |
| delta_otsA_trehalose | -0.534 | 0.066 |