Top 10 genes with highest correlation to Rv0954/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1220c/- | (cc=0.5475) | info on Rv1220c/- |
| Rv0204c/- | (cc=0.5118) | info on Rv0204c/- |
| Rv0955/- | (cc=0.472) | info on Rv0955/- |
| Rv2029c/pfkB | (cc=0.4447) | info on Rv2029c/pfkB |
| Rv1086/- | (cc=0.4238) | info on Rv1086/- |
| Rv3899c/- | (cc=0.4099) | info on Rv3899c/- |
| Rv3005c/- | (cc=0.4007) | info on Rv3005c/- |
| Rv1078/pra | (cc=0.3872) | info on Rv1078/pra |
| Rv1785c/cyp143 | (cc=0.3837) | info on Rv1785c/cyp143 |
| Rv3306c/amiB1 | (cc=0.3801) | info on Rv3306c/amiB1 |
Correlation of Rv0954/- with Rv1220c/-
Normalized LFCs for Rv0954/-:
(description and provenance of datasets)
| Rv0954/- | Rv1220c/- | |
| Fe_supp_jason_reseq | -0.169 | -0.745 |
| low_pH_jason_reseq | -1.852 | -2.752 |
| NO_jason_reseq | -1.089 | 0.0 |
| B6_jason_reseq | -0.921 | -2.692 |
| MHCII_jason_reseq | -1.451 | -0.723 |
| Isoniazid02 | 0.311 | 1.812 |
| Rifampicin4 | -0.969 | -4.069 |
| Ethambutol3 | 2.872 | 1.948 |
| Meropenem3 | 0.48 | -2.782 |
| Vancomycin16 | -0.403 | -2.435 |
| Rv2680_day32 | -0.228 | -2.519 |
| H37Rv_KO_MarP | -1.51 | -0.776 |
| hypoxia_3wks | -2.245 | -1.447 |
| hypoxia_6wks | -1.539 | -2.936 |
| glycerol | -0.379 | 0.301 |
| cholesterol | 0.0 | 1.507 |
| AJ | -0.55 | -1.185 |
| Bibs02 | 1.024 | 0.502 |
| Bibs02c | 0.602 | 0.288 |
| BL6 | 0.17 | 0.0 |
| BL6a | -0.372 | -0.517 |
| BXD01 | -0.766 | -2.216 |
| BXD010 | -0.559 | -1.316 |
| BXD011 | -0.663 | -1.837 |
| BXD03 | 0.494 | -0.903 |
| BXD04 | -0.591 | -0.936 |
| BXD05 | -0.131 | -0.95 |
| BXD06 | 0.0 | -1.241 |
| BXD07 | -1.401 | -1.769 |
| BXD08 | -1.172 | -2.061 |
| BXD09 | -0.827 | -0.703 |
| CAST | -0.828 | -2.75 |
| CCcont | 0.399 | 0.686 |
| DS01 | 1.073 | 0.429 |
| DS02 | 1.06 | 0.135 |
| DS04 | 0.898 | 1.068 |
| DS0c | -0.701 | 0.596 |
| GP01 | -0.728 | -0.483 |
| GP02 | 1.091 | -0.747 |
| GP0c | -0.795 | -0.637 |
| NOD | -0.607 | -1.219 |
| NZO | -0.136 | -2.592 |
| PWK | 0.641 | -2.265 |
| H37Rv_KO_CtpC | 0.467 | 0.712 |
| H37Rv_KO_CtpD | 0.439 | 1.402 |
| H37Rv_KO_Rv1272 | -0.116 | -0.028 |
| H37Rv_KO_SugABC | -0.705 | 0.103 |
| H37Rv_KO_MbtN | 0.423 | 0.026 |
| Trans05 | -0.709 | 0.009 |
| macrophage_unactivated | 0.126 | 1.616 |
| IL1 | 0.403 | 0.638 |
| Rapamycin | -0.126 | 1.108 |
| Tcell | 0.955 | 0.991 |
| GMCSF | 0.686 | 0.525 |
| IFNab | 1.082 | 0.695 |
| IFNg | 1.724 | -0.096 |
| IFNg_GMCSF1 | 0.707 | -0.057 |
| Rv1432_day32 | -1.103 | -2.325 |
| Rv1565c_day32 | -1.098 | -1.087 |
| secA2_input | -0.294 | 1.187 |
| delta_Rv3594 | 0.852 | 0.731 |
| delta_Rv3717 | 1.698 | 0.797 |
| delta_Rv3811 | 0.727 | 1.514 |
| delta_Rv0954 | -4.188 | -1.535 |
| PonA1 | -0.241 | -2.917 |
| EccD1_KO | 0.464 | 0.059 |
| EspI_KO | 0.87 | 0.017 |
| PE35_KO | -1.088 | -0.971 |
| PPE68_KO | -0.208 | -0.349 |
| glycerol2 | -0.265 | -0.328 |
| lignocerate | -1.249 | -0.032 |
| oleate | -1.181 | -1.221 |
| phosphatidylcholine | -1.167 | -0.436 |
| acetate | 0.593 | 0.495 |
| glucAc | -0.195 | 0.37 |
| Rv0950ko | -1.191 | -1.553 |
| Rv1096ko | -0.54 | -0.51 |
| Rv3684ko | -0.488 | -1.637 |
| delta_otsA_trehalose | 1.293 | 1.258 |