TnSeqCorr

Top 10 genes with highest correlation to Rv0813c/-:

update plotcorrelationlink to info on gene
Rv0806c/cpsY (cc=0.6692) info on Rv0806c/cpsY
Rv0119/fadD7 (cc=0.5449) info on Rv0119/fadD7
Rv2609c/- (cc=0.5418) info on Rv2609c/-
Rv2404c/lepA (cc=0.5343) info on Rv2404c/lepA
Rv3256c/- (cc=0.5325) info on Rv3256c/-
Rv1957/- (cc=0.5323) info on Rv1957/-
Rv1822/pgsA2 (cc=0.5312) info on Rv1822/pgsA2
Rv1590/- (cc=0.5236) info on Rv1590/-
Rv2838c/rbfA (cc=0.5227) info on Rv2838c/rbfA
Rv1512/epiA (cc=0.5192) info on Rv1512/epiA

Correlation of Rv0813c/- with Rv3256c/-

Normalized LFCs for Rv0813c/-:
(description and provenance of datasets)
Rv0813c/-Rv3256c/-
Fe_supp_jason_reseq

-0.53

-0.688

low_pH_jason_reseq

0.216

-0.338

NO_jason_reseq

-0.407

0.0

B6_jason_reseq

-0.662

-0.071

MHCII_jason_reseq

-0.313

0.977

Isoniazid02

-0.154

-1.73

Rifampicin4

-0.195

1.562

Ethambutol3

0.916

-0.23

Meropenem3

0.363

-0.612

Vancomycin16

-0.215

-0.207

Rv2680_day32

-0.11

-2.899

H37Rv_KO_MarP

-0.634

-0.291

hypoxia_3wks

-0.698

-1.782

hypoxia_6wks

-0.484

-2.518

glycerol

0.009

2.907

cholesterol

-0.405

-0.055

AJ

-1.02

-1.477

Bibs02

-0.49

0.42

Bibs02c

0.235

0.418

BL6

-0.388

-1.306

BL6a

-0.046

0.65

BXD01

-0.766

-1.178

BXD010

-0.546

-0.816

BXD011

-0.434

-0.9

BXD03

-1.265

-2.202

BXD04

-0.718

-1.725

BXD05

-0.61

-1.701

BXD06

-0.422

-1.393

BXD07

-0.489

-1.59

BXD08

-0.613

-1.456

BXD09

-1.006

-1.866

CAST

-1.111

-0.679

CCcont

-0.202

-0.514

DS01

-0.835

-1.668

DS02

-1.782

-1.174

DS04

-0.749

1.238

DS0c

-1.31

-0.343

GP01

0.221

-1.134

GP02

-0.544

-1.43

GP0c

-0.183

-0.205

NOD

-0.794

-2.031

NZO

-0.582

-1.636

PWK

-0.236

-1.458

H37Rv_KO_CtpC

-0.091

-0.877

H37Rv_KO_CtpD

-0.354

-1.386

H37Rv_KO_Rv1272

-0.191

-0.946

H37Rv_KO_SugABC

0.578

1.043

H37Rv_KO_MbtN

-0.313

-0.141

Trans05

-1.375

0.0

macrophage_unactivated

-1.092

0.338

IL1

0.205

1.391

Rapamycin

-0.325

0.485

Tcell

0.225

0.978

GMCSF

0.261

-0.813

IFNab

-0.057

-0.931

IFNg

-0.612

1.849

IFNg_GMCSF1

-0.123

0.647

Rv1432_day32

-0.329

-0.727

Rv1565c_day32

-0.678

-4.854

secA2_input

-0.272

-0.712

delta_Rv3594

2.744

2.47

delta_Rv3717

2.841

3.651

delta_Rv3811

2.522

2.668

delta_Rv0954

1.625

1.009

PonA1

-0.696

-0.223

EccD1_KO

0.155

-1.365

EspI_KO

0.299

-0.856

PE35_KO

0.099

-0.957

PPE68_KO

-0.809

-2.921

glycerol2

0.115

-0.595

lignocerate

0.23

-0.024

oleate

0.145

-2.393

phosphatidylcholine

-0.122

-0.69

acetate

1.076

0.324

glucAc

0.474

0.681

Rv0950ko

-0.296

1.182

Rv1096ko

-0.018

0.63

Rv3684ko

0.0

-0.802

delta_otsA_trehalose

1.174

-0.965