Top 10 genes with highest correlation to Rv0628c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3439c/- | (cc=0.4635) | info on Rv3439c/- |
| Rv1075c/- | (cc=0.4544) | info on Rv1075c/- |
| Rv2768c/PPE43 | (cc=0.4372) | info on Rv2768c/PPE43 |
| Rv0791c/- | (cc=0.4334) | info on Rv0791c/- |
| Rv3371/- | (cc=0.4293) | info on Rv3371/- |
| Rv2034/- | (cc=0.4255) | info on Rv2034/- |
| Rv2831/echA16 | (cc=0.4153) | info on Rv2831/echA16 |
| Rv2013/- | (cc=0.4142) | info on Rv2013/- |
| Rv2420c/- | (cc=0.4128) | info on Rv2420c/- |
| Rv2002/fabG3 | (cc=0.4088) | info on Rv2002/fabG3 |
Correlation of Rv0628c/- with Rv2831/echA16
Normalized LFCs for Rv0628c/-:
(description and provenance of datasets)
| Rv0628c/- | Rv2831/echA16 | |
| Fe_supp_jason_reseq | -1.418 | -0.256 |
| low_pH_jason_reseq | -1.128 | 0.639 |
| NO_jason_reseq | 0.845 | -0.116 |
| B6_jason_reseq | -0.181 | 1.588 |
| MHCII_jason_reseq | -0.579 | 1.883 |
| Isoniazid02 | 0.503 | 2.51 |
| Rifampicin4 | 0.474 | 0.601 |
| Ethambutol3 | 0.045 | 2.881 |
| Meropenem3 | 0.483 | 0.048 |
| Vancomycin16 | 0.098 | 0.499 |
| Rv2680_day32 | 1.237 | -3.534 |
| H37Rv_KO_MarP | 0.319 | -0.086 |
| hypoxia_3wks | 0.159 | 0.861 |
| hypoxia_6wks | 0.01 | 0.489 |
| glycerol | -0.462 | 0.205 |
| cholesterol | 1.184 | 1.595 |
| AJ | 0.076 | 0.145 |
| Bibs02 | 0.38 | 0.54 |
| Bibs02c | -0.07 | -0.527 |
| BL6 | 0.07 | -1.548 |
| BL6a | -0.344 | -0.756 |
| BXD01 | -0.431 | -1.326 |
| BXD010 | -1.06 | -1.676 |
| BXD011 | -0.415 | 0.027 |
| BXD03 | -0.904 | -1.77 |
| BXD04 | -0.095 | -1.259 |
| BXD05 | 0.312 | -0.812 |
| BXD06 | -0.151 | -1.436 |
| BXD07 | 0.365 | -0.809 |
| BXD08 | 0.179 | -0.549 |
| BXD09 | -0.642 | -1.143 |
| CAST | 0.479 | -1.39 |
| CCcont | 0.113 | -1.479 |
| DS01 | 0.741 | 0.541 |
| DS02 | 0.849 | 0.859 |
| DS04 | 1.952 | 1.427 |
| DS0c | 0.105 | 0.046 |
| GP01 | -0.458 | 0.531 |
| GP02 | -1.061 | -1.576 |
| GP0c | -0.233 | -0.381 |
| NOD | -0.633 | -0.724 |
| NZO | -0.874 | -1.623 |
| PWK | 0.016 | 0.432 |
| H37Rv_KO_CtpC | -0.753 | -1.522 |
| H37Rv_KO_CtpD | -0.637 | 0.573 |
| H37Rv_KO_Rv1272 | -0.219 | -0.773 |
| H37Rv_KO_SugABC | -1.277 | -1.335 |
| H37Rv_KO_MbtN | -0.546 | -1.826 |
| Trans05 | -0.532 | -2.563 |
| macrophage_unactivated | 0.859 | -0.347 |
| IL1 | 1.092 | 1.385 |
| Rapamycin | 1.08 | 0.064 |
| Tcell | 0.388 | 0.821 |
| GMCSF | 1.354 | -0.055 |
| IFNab | 0.39 | 0.653 |
| IFNg | -0.214 | 0.673 |
| IFNg_GMCSF1 | -0.116 | 0.503 |
| Rv1432_day32 | 0.587 | -0.322 |
| Rv1565c_day32 | 1.205 | 0.924 |
| secA2_input | 1.223 | 0.0 |
| delta_Rv3594 | 0.828 | 1.825 |
| delta_Rv3717 | 0.54 | 1.538 |
| delta_Rv3811 | 2.085 | 2.066 |
| delta_Rv0954 | 1.246 | 2.374 |
| PonA1 | 1.503 | 3.382 |
| EccD1_KO | 0.089 | -1.184 |
| EspI_KO | 0.02 | -0.054 |
| PE35_KO | -1.485 | 0.055 |
| PPE68_KO | -0.531 | -1.389 |
| glycerol2 | 0.0 | -1.345 |
| lignocerate | 0.429 | -1.729 |
| oleate | -0.121 | -0.519 |
| phosphatidylcholine | 0.594 | -1.62 |
| acetate | -0.171 | -2.613 |
| glucAc | -0.243 | -1.71 |
| Rv0950ko | 0.069 | -1.152 |
| Rv1096ko | -0.069 | 0.232 |
| Rv3684ko | -0.671 | -0.848 |
| delta_otsA_trehalose | -0.925 | -0.106 |