Top 10 genes with highest correlation to Rv0622/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0929/pstC2 | (cc=0.5827) | info on Rv0929/pstC2 |
| Rv3050c/- | (cc=0.5677) | info on Rv3050c/- |
| Rv0309/- | (cc=0.5619) | info on Rv0309/- |
| Rv0930/pstA1 | (cc=0.5289) | info on Rv0930/pstA1 |
| Rv3523/ltp3 | (cc=0.524) | info on Rv3523/ltp3 |
| Rv1831/- | (cc=0.5178) | info on Rv1831/- |
| Rv0928/pstS3 | (cc=0.513) | info on Rv0928/pstS3 |
| Rv0644c/mmaA2 | (cc=0.5106) | info on Rv0644c/mmaA2 |
| Rv3214/gpm2 | (cc=0.5073) | info on Rv3214/gpm2 |
| Rv0781/ptrBa | (cc=0.5055) | info on Rv0781/ptrBa |
Correlation of Rv0622/- with Rv1831/-
Normalized LFCs for Rv0622/-:
(description and provenance of datasets)
| Rv0622/- | Rv1831/- | |
| Fe_supp_jason_reseq | 0.898 | -0.275 |
| low_pH_jason_reseq | -0.246 | -0.952 |
| NO_jason_reseq | -0.74 | -0.68 |
| B6_jason_reseq | -0.107 | -1.36 |
| MHCII_jason_reseq | -0.276 | -0.162 |
| Isoniazid02 | 0.224 | 0.665 |
| Rifampicin4 | -0.617 | -0.531 |
| Ethambutol3 | 1.833 | 1.136 |
| Meropenem3 | 1.434 | 0.271 |
| Vancomycin16 | -0.042 | -0.355 |
| Rv2680_day32 | 1.035 | 0.69 |
| H37Rv_KO_MarP | 0.49 | -0.512 |
| hypoxia_3wks | 0.355 | 0.124 |
| hypoxia_6wks | 0.063 | 1.021 |
| glycerol | -0.573 | -0.11 |
| cholesterol | 0.59 | 0.052 |
| AJ | 0.373 | -0.613 |
| Bibs02 | 0.864 | -1.674 |
| Bibs02c | -1.734 | 0.349 |
| BL6 | 1.247 | 0.796 |
| BL6a | 1.484 | 1.37 |
| BXD01 | 1.733 | 2.036 |
| BXD010 | 2.179 | 0.407 |
| BXD011 | 2.275 | 1.379 |
| BXD03 | 1.212 | 1.217 |
| BXD04 | 1.399 | 1.986 |
| BXD05 | 1.275 | 1.501 |
| BXD06 | 1.418 | 1.635 |
| BXD07 | 1.508 | 1.565 |
| BXD08 | 2.251 | 2.417 |
| BXD09 | 1.492 | 1.261 |
| CAST | 1.668 | -0.087 |
| CCcont | 1.459 | 1.331 |
| DS01 | 1.116 | -0.349 |
| DS02 | -0.922 | -0.487 |
| DS04 | -0.202 | 1.148 |
| DS0c | -0.413 | 0.476 |
| GP01 | -0.418 | -0.413 |
| GP02 | 1.275 | 1.186 |
| GP0c | 0.264 | -0.086 |
| NOD | 0.547 | 1.302 |
| NZO | -0.633 | -1.05 |
| PWK | 1.047 | 0.198 |
| H37Rv_KO_CtpC | 1.35 | 0.72 |
| H37Rv_KO_CtpD | 0.714 | -0.09 |
| H37Rv_KO_Rv1272 | 1.056 | 1.759 |
| H37Rv_KO_SugABC | 0.543 | 1.836 |
| H37Rv_KO_MbtN | 0.075 | 1.611 |
| Trans05 | 1.364 | 1.252 |
| macrophage_unactivated | 0.767 | 0.568 |
| IL1 | 0.267 | -0.083 |
| Rapamycin | 0.608 | -0.439 |
| Tcell | 0.127 | 0.091 |
| GMCSF | 0.0 | 0.314 |
| IFNab | 0.701 | 0.689 |
| IFNg | -0.529 | 0.265 |
| IFNg_GMCSF1 | -0.041 | 0.547 |
| Rv1432_day32 | 3.609 | 1.313 |
| Rv1565c_day32 | 1.598 | -0.471 |
| secA2_input | -0.504 | -0.25 |
| delta_Rv3594 | 1.267 | -0.494 |
| delta_Rv3717 | 1.367 | 0.323 |
| delta_Rv3811 | 1.42 | -0.004 |
| delta_Rv0954 | 0.691 | -0.375 |
| PonA1 | 0.877 | -1.199 |
| EccD1_KO | -0.457 | 0.96 |
| EspI_KO | 0.211 | 0.414 |
| PE35_KO | -0.595 | -0.029 |
| PPE68_KO | 0.237 | 0.106 |
| glycerol2 | -0.167 | -0.263 |
| lignocerate | 0.068 | 0.145 |
| oleate | -0.757 | 0.424 |
| phosphatidylcholine | -0.151 | 0.326 |
| acetate | -0.489 | -0.8 |
| glucAc | -0.268 | -0.318 |
| Rv0950ko | -1.559 | -0.012 |
| Rv1096ko | 0.154 | -0.546 |
| Rv3684ko | 0.688 | -0.193 |
| delta_otsA_trehalose | -1.825 | -2.555 |