Top 10 genes with highest correlation to Rv0609/vapC28:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0964c/- | (cc=0.6534) | info on Rv0964c/- |
| Rv3536c/hsaE | (cc=0.6176) | info on Rv3536c/hsaE |
| Rv2426c/- | (cc=0.5632) | info on Rv2426c/- |
| Rv2657c/- | (cc=0.5495) | info on Rv2657c/- |
| Rv2499c/- | (cc=0.5416) | info on Rv2499c/- |
| Rv0084/hycD | (cc=0.527) | info on Rv0084/hycD |
| Rv1852/ureG | (cc=0.5063) | info on Rv1852/ureG |
| Rv3482c/- | (cc=0.5048) | info on Rv3482c/- |
| Rv2402/- | (cc=0.5047) | info on Rv2402/- |
| Rv3354/- | (cc=0.504) | info on Rv3354/- |
Correlation of Rv0609/vapC28 with Rv0964c/-
Normalized LFCs for Rv0609/vapC28:
(description and provenance of datasets)
| Rv0609/vapC28 | Rv0964c/- | |
| Fe_supp_jason_reseq | -1.708 | -2.796 |
| low_pH_jason_reseq | -1.253 | 0.524 |
| NO_jason_reseq | -0.575 | -0.953 |
| B6_jason_reseq | -1.243 | 0.912 |
| MHCII_jason_reseq | -0.529 | 0.963 |
| Isoniazid02 | 0.032 | 0.242 |
| Rifampicin4 | -0.617 | 0.663 |
| Ethambutol3 | -0.083 | -0.303 |
| Meropenem3 | -0.068 | -0.277 |
| Vancomycin16 | 0.257 | 0.366 |
| Rv2680_day32 | -1.501 | -0.423 |
| H37Rv_KO_MarP | 0.571 | -0.085 |
| hypoxia_3wks | -1.013 | 0.0 |
| hypoxia_6wks | 0.451 | 0.699 |
| glycerol | 0.082 | -0.149 |
| cholesterol | -0.284 | -0.378 |
| AJ | -0.943 | -0.619 |
| Bibs02 | -0.13 | 0.461 |
| Bibs02c | 0.706 | 0.249 |
| BL6 | -0.671 | -0.242 |
| BL6a | -0.245 | -0.815 |
| BXD01 | -0.792 | -1.849 |
| BXD010 | -3.192 | -2.665 |
| BXD011 | -1.591 | -1.69 |
| BXD03 | -1.056 | 0.14 |
| BXD04 | -0.913 | -1.484 |
| BXD05 | -0.22 | -2.345 |
| BXD06 | -0.949 | -1.655 |
| BXD07 | -1.101 | -1.183 |
| BXD08 | -0.329 | -1.414 |
| BXD09 | -1.341 | -1.783 |
| CAST | 0.227 | 1.098 |
| CCcont | -0.369 | -0.802 |
| DS01 | -0.33 | 0.739 |
| DS02 | 0.088 | 0.707 |
| DS04 | 1.578 | 0.802 |
| DS0c | -0.107 | 0.33 |
| GP01 | -0.785 | -0.176 |
| GP02 | -1.855 | -0.148 |
| GP0c | -0.907 | 0.267 |
| NOD | 0.397 | 0.399 |
| NZO | -0.042 | -0.63 |
| PWK | 0.105 | 0.081 |
| H37Rv_KO_CtpC | -2.645 | -2.904 |
| H37Rv_KO_CtpD | -0.302 | 0.829 |
| H37Rv_KO_Rv1272 | 0.617 | -1.711 |
| H37Rv_KO_SugABC | -0.465 | -0.634 |
| H37Rv_KO_MbtN | -1.019 | -1.751 |
| Trans05 | -2.639 | -1.834 |
| macrophage_unactivated | -0.054 | -0.275 |
| IL1 | -2.204 | 0.092 |
| Rapamycin | -0.316 | 0.095 |
| Tcell | -0.515 | 0.365 |
| GMCSF | -0.045 | 0.689 |
| IFNab | -0.366 | -1.046 |
| IFNg | -1.008 | -0.452 |
| IFNg_GMCSF1 | -0.437 | -0.035 |
| Rv1432_day32 | -0.318 | 1.55 |
| Rv1565c_day32 | -2.453 | -2.41 |
| secA2_input | 0.1 | 0.388 |
| delta_Rv3594 | 0.35 | -0.203 |
| delta_Rv3717 | -0.199 | -0.321 |
| delta_Rv3811 | -0.467 | -1.02 |
| delta_Rv0954 | 0.021 | -1.344 |
| PonA1 | -0.386 | -0.756 |
| EccD1_KO | 0.651 | 0.52 |
| EspI_KO | 1.012 | -0.508 |
| PE35_KO | 0.788 | 1.088 |
| PPE68_KO | 1.344 | 1.657 |
| glycerol2 | 1.08 | 2.826 |
| lignocerate | 1.595 | 3.942 |
| oleate | 0.183 | 1.969 |
| phosphatidylcholine | 1.112 | 3.419 |
| acetate | 1.026 | 4.683 |
| glucAc | 1.148 | 3.524 |
| Rv0950ko | -0.525 | -0.178 |
| Rv1096ko | 0.615 | -0.458 |
| Rv3684ko | -0.121 | -0.786 |
| delta_otsA_trehalose | -0.893 | -0.415 |