TnSeqCorr

Top 10 genes with highest correlation to Rv0451c/mmpS4:

update plotcorrelationlink to info on gene
Rv1127c/ppdK (cc=0.6139) info on Rv1127c/ppdK
Rv0450c/mmpL4 (cc=0.6126) info on Rv0450c/mmpL4
Rv2047c/- (cc=0.5433) info on Rv2047c/-
Rv2799/- (cc=0.522) info on Rv2799/-
Rv3492c/- (cc=0.5147) info on Rv3492c/-
Rv2048c/pks12 (cc=0.4971) info on Rv2048c/pks12
Rv0202c/mmpL11 (cc=0.4824) info on Rv0202c/mmpL11
Rv2476c/gdh (cc=0.4819) info on Rv2476c/gdh
Rv2475c/- (cc=0.4426) info on Rv2475c/-
Rv3501c/yrbE4A (cc=0.4344) info on Rv3501c/yrbE4A

Correlation of Rv0451c/mmpS4 with Rv1127c/ppdK

Normalized LFCs for Rv0451c/mmpS4:
(description and provenance of datasets)
Rv0451c/mmpS4Rv1127c/ppdK
Fe_supp_jason_reseq

2.177

1.509

low_pH_jason_reseq

-1.35

1.916

NO_jason_reseq

-3.471

-2.741

B6_jason_reseq

-1.356

-0.723

MHCII_jason_reseq

-1.292

-1.209

Isoniazid02

-2.923

-1.43

Rifampicin4

0.579

-0.336

Ethambutol3

-3.499

-0.967

Meropenem3

-0.326

0.477

Vancomycin16

-1.005

2.274

Rv2680_day32

-3.287

-1.357

H37Rv_KO_MarP

-0.883

0.26

hypoxia_3wks

-0.829

-0.813

hypoxia_6wks

-0.706

-0.426

glycerol

-1.369

-0.982

cholesterol

-2.098

-2.208

AJ

-2.306

-1.738

Bibs02

-1.507

0.044

Bibs02c

-0.629

-0.329

BL6

-0.639

0.413

BL6a

-0.359

-0.611

BXD01

-1.768

-1.345

BXD010

-0.704

-1.093

BXD011

-0.923

-0.436

BXD03

-0.691

-0.374

BXD04

0.139

-1.2

BXD05

-1.182

-0.137

BXD06

-0.734

0.0

BXD07

-2.006

-1.43

BXD08

-1.496

-1.29

BXD09

-1.158

-1.363

CAST

-2.022

-2.379

CCcont

0.932

0.493

DS01

-0.946

-2.291

DS02

-2.299

-2.247

DS04

-2.472

-2.426

DS0c

-0.652

-1.625

GP01

-0.024

-0.898

GP02

-0.879

-1.186

GP0c

-0.769

-0.401

NOD

-2.374

-2.179

NZO

-1.982

-1.595

PWK

-0.59

-1.283

H37Rv_KO_CtpC

-1.615

-0.166

H37Rv_KO_CtpD

0.295

-1.584

H37Rv_KO_Rv1272

0.381

0.0

H37Rv_KO_SugABC

0.068

-1.162

H37Rv_KO_MbtN

0.137

1.367

Trans05

-1.077

-0.855

macrophage_unactivated

-2.642

-2.273

IL1

1.189

2.308

Rapamycin

0.555

0.795

Tcell

-1.372

-0.349

GMCSF

-4.341

-3.226

IFNab

-1.856

-0.859

IFNg

-2.237

-1.109

IFNg_GMCSF1

-1.405

-1.093

Rv1432_day32

0.0

-0.343

Rv1565c_day32

-1.848

-1.488

secA2_input

0.044

0.787

delta_Rv3594

-1.182

1.346

delta_Rv3717

-1.349

-0.219

delta_Rv3811

-0.818

0.593

delta_Rv0954

0.173

0.609

PonA1

-0.521

1.738

EccD1_KO

-0.717

-0.964

EspI_KO

-0.707

-1.047

PE35_KO

-0.636

-0.175

PPE68_KO

-1.091

-0.496

glycerol2

-0.31

-0.369

lignocerate

-0.571

-0.153

oleate

-2.156

-0.373

phosphatidylcholine

0.973

-0.368

acetate

-0.515

-0.209

glucAc

-0.931

0.333

Rv0950ko

-0.38

-0.347

Rv1096ko

-0.302

0.244

Rv3684ko

-1.055

-0.789

delta_otsA_trehalose

-0.214

-0.675