Top 10 genes with highest correlation to Rv0393/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3463/- | (cc=0.5505) | info on Rv3463/- |
| Rv2487c/PE_PGRS42 | (cc=0.4993) | info on Rv2487c/PE_PGRS42 |
| Rv3897c/- | (cc=0.4824) | info on Rv3897c/- |
| Rv3691/- | (cc=0.4783) | info on Rv3691/- |
| Rv0834c/PE_PGRS14 | (cc=0.4737) | info on Rv0834c/PE_PGRS14 |
| Rv3744/nmtR | (cc=0.4691) | info on Rv3744/nmtR |
| Rv0110/- | (cc=0.4598) | info on Rv0110/- |
| Rv0593/lprL | (cc=0.452) | info on Rv0593/lprL |
| Rv0747/PE_PGRS10 | (cc=0.4512) | info on Rv0747/PE_PGRS10 |
| Rv2671/ribD | (cc=0.4475) | info on Rv2671/ribD |
Correlation of Rv0393/- with Rv3463/-
Normalized LFCs for Rv0393/-:
(description and provenance of datasets)
| Rv0393/- | Rv3463/- | |
| Fe_supp_jason_reseq | -0.822 | -0.474 |
| low_pH_jason_reseq | 0.042 | -0.557 |
| NO_jason_reseq | -0.79 | -0.732 |
| B6_jason_reseq | 0.352 | 0.192 |
| MHCII_jason_reseq | -0.898 | -0.018 |
| Isoniazid02 | -0.109 | -0.997 |
| Rifampicin4 | 0.555 | -0.046 |
| Ethambutol3 | 0.427 | 0.491 |
| Meropenem3 | 0.975 | 0.906 |
| Vancomycin16 | -0.082 | -0.249 |
| Rv2680_day32 | -0.373 | -0.349 |
| H37Rv_KO_MarP | 0.689 | 1.239 |
| hypoxia_3wks | -0.459 | 0.104 |
| hypoxia_6wks | -1.052 | -0.48 |
| glycerol | 0.638 | 0.436 |
| cholesterol | 0.513 | -0.369 |
| AJ | 0.903 | -0.348 |
| Bibs02 | 0.691 | -0.436 |
| Bibs02c | 0.268 | 0.149 |
| BL6 | 0.399 | -0.477 |
| BL6a | 0.0 | -0.297 |
| BXD01 | 0.447 | -0.246 |
| BXD010 | 0.207 | -0.202 |
| BXD011 | -0.842 | -0.601 |
| BXD03 | -0.639 | -0.311 |
| BXD04 | 0.133 | 0.516 |
| BXD05 | 0.265 | 0.026 |
| BXD06 | -0.274 | -0.296 |
| BXD07 | 0.062 | -0.377 |
| BXD08 | 1.08 | 0.135 |
| BXD09 | -0.164 | -0.496 |
| CAST | 1.356 | 0.409 |
| CCcont | 0.028 | -0.248 |
| DS01 | 0.216 | -0.265 |
| DS02 | 0.548 | 0.469 |
| DS04 | 0.419 | 0.365 |
| DS0c | 0.242 | 1.037 |
| GP01 | 0.394 | -0.833 |
| GP02 | -0.159 | -0.753 |
| GP0c | 0.114 | -0.626 |
| NOD | -0.018 | 0.36 |
| NZO | 0.838 | 0.25 |
| PWK | 1.395 | 0.077 |
| H37Rv_KO_CtpC | 0.34 | -0.033 |
| H37Rv_KO_CtpD | -0.469 | -1.108 |
| H37Rv_KO_Rv1272 | -0.152 | -0.976 |
| H37Rv_KO_SugABC | 0.959 | 0.465 |
| H37Rv_KO_MbtN | 0.132 | -0.508 |
| Trans05 | 0.539 | -0.629 |
| macrophage_unactivated | -0.685 | -1.689 |
| IL1 | -0.276 | -0.887 |
| Rapamycin | 0.049 | -1.059 |
| Tcell | 0.121 | -0.124 |
| GMCSF | -0.399 | 0.0 |
| IFNab | -1.046 | -1.079 |
| IFNg | -0.871 | -0.799 |
| IFNg_GMCSF1 | -0.311 | -0.729 |
| Rv1432_day32 | 0.046 | -0.438 |
| Rv1565c_day32 | -1.264 | -0.69 |
| secA2_input | 1.14 | 0.964 |
| delta_Rv3594 | 0.017 | -0.659 |
| delta_Rv3717 | 0.042 | -0.059 |
| delta_Rv3811 | -0.21 | -1.136 |
| delta_Rv0954 | 0.106 | -0.682 |
| PonA1 | 0.38 | -0.815 |
| EccD1_KO | 0.145 | 0.03 |
| EspI_KO | -0.459 | 0.148 |
| PE35_KO | -0.298 | -0.105 |
| PPE68_KO | -0.413 | 0.0 |
| glycerol2 | 0.532 | 1.401 |
| lignocerate | 0.795 | 0.426 |
| oleate | 0.275 | 0.024 |
| phosphatidylcholine | 0.868 | 0.819 |
| acetate | -0.042 | -0.414 |
| glucAc | 0.332 | -0.555 |
| Rv0950ko | 0.516 | 0.639 |
| Rv1096ko | 1.258 | 0.317 |
| Rv3684ko | 0.193 | -0.973 |
| delta_otsA_trehalose | -0.147 | 0.0 |