TnSeqCorr

Top 10 genes with highest correlation to Rv0365c/-:

update plotcorrelationlink to info on gene
Rv3138/pflA (cc=0.4881) info on Rv3138/pflA
Rv3675/- (cc=0.4735) info on Rv3675/-
Rv0145/- (cc=0.468) info on Rv0145/-
Rv0971c/echA7 (cc=0.4593) info on Rv0971c/echA7
Rv1981c/nrdF1 (cc=0.4332) info on Rv1981c/nrdF1
Rv3008/- (cc=0.4268) info on Rv3008/-
Rv2390c/- (cc=0.4256) info on Rv2390c/-
Rv2891/- (cc=0.4252) info on Rv2891/-
Rv0874c/- (cc=0.4176) info on Rv0874c/-
Rv0897c/- (cc=0.4155) info on Rv0897c/-

Correlation of Rv0365c/- with Rv3008/-

Normalized LFCs for Rv0365c/-:
(description and provenance of datasets)
Rv0365c/-Rv3008/-
Fe_supp_jason_reseq

-0.158

-0.606

low_pH_jason_reseq

-0.793

-0.141

NO_jason_reseq

0.339

0.326

B6_jason_reseq

-0.393

-0.509

MHCII_jason_reseq

-0.159

0.113

Isoniazid02

0.042

-0.685

Rifampicin4

0.436

0.75

Ethambutol3

0.306

0.227

Meropenem3

-0.999

-0.389

Vancomycin16

-0.358

-0.501

Rv2680_day32

0.061

-0.706

H37Rv_KO_MarP

-0.095

0.126

hypoxia_3wks

-0.494

-0.036

hypoxia_6wks

-1.038

-0.217

glycerol

0.844

-0.032

cholesterol

0.129

0.121

AJ

-0.254

0.176

Bibs02

0.234

0.612

Bibs02c

0.338

0.518

BL6

0.314

0.415

BL6a

0.176

0.713

BXD01

0.361

0.137

BXD010

0.344

-0.213

BXD011

2.593

0.531

BXD03

0.441

0.571

BXD04

-0.383

0.28

BXD05

0.523

0.803

BXD06

0.278

0.701

BXD07

0.418

0.541

BXD08

0.202

0.64

BXD09

-0.188

0.549

CAST

0.182

-0.504

CCcont

0.283

-0.029

DS01

0.175

0.616

DS02

1.093

0.813

DS04

0.114

0.141

DS0c

0.149

0.762

GP01

0.842

1.135

GP02

0.915

-0.386

GP0c

0.377

0.132

NOD

-0.288

-0.054

NZO

-0.045

-0.198

PWK

0.271

0.406

H37Rv_KO_CtpC

0.044

0.288

H37Rv_KO_CtpD

0.511

0.73

H37Rv_KO_Rv1272

0.097

0.016

H37Rv_KO_SugABC

0.742

-0.085

H37Rv_KO_MbtN

0.381

0.299

Trans05

-0.143

0.517

macrophage_unactivated

0.297

0.221

IL1

0.338

0.243

Rapamycin

0.657

0.411

Tcell

0.212

0.192

GMCSF

0.581

0.446

IFNab

0.608

0.19

IFNg

0.468

0.187

IFNg_GMCSF1

0.273

0.487

Rv1432_day32

-0.103

-0.078

Rv1565c_day32

-0.377

0.051

secA2_input

0.155

-0.326

delta_Rv3594

-0.497

0.058

delta_Rv3717

-0.653

-0.141

delta_Rv3811

-0.228

0.165

delta_Rv0954

-0.411

0.327

PonA1

0.22

0.967

EccD1_KO

0.342

-0.312

EspI_KO

-0.268

-0.893

PE35_KO

-0.292

-0.531

PPE68_KO

-0.378

-0.694

glycerol2

-0.087

0.419

lignocerate

0.287

0.388

oleate

0.102

0.496

phosphatidylcholine

0.146

0.507

acetate

0.012

-0.354

glucAc

0.133

-0.239

Rv0950ko

0.657

0.326

Rv1096ko

0.262

0.232

Rv3684ko

0.134

0.432

delta_otsA_trehalose

-0.284

-0.559