Top 10 genes with highest correlation to Rv0340/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0570/nrdZ | (cc=0.423) | info on Rv0570/nrdZ |
| Rv0488/- | (cc=0.4209) | info on Rv0488/- |
| Rv3086/adhD | (cc=0.4142) | info on Rv3086/adhD |
| Rv0871/cspB | (cc=0.4086) | info on Rv0871/cspB |
| Rv0785/- | (cc=0.4077) | info on Rv0785/- |
| Rv3843c/- | (cc=0.4064) | info on Rv3843c/- |
| Rv0906/- | (cc=0.4061) | info on Rv0906/- |
| Rv0843/- | (cc=0.3991) | info on Rv0843/- |
| Rv2982c/gpdA2 | (cc=0.3867) | info on Rv2982c/gpdA2 |
| Rv1489A/- | (cc=0.3863) | info on Rv1489A/- |
Correlation of Rv0340/- with Rv0570/nrdZ
Normalized LFCs for Rv0340/-:
(description and provenance of datasets)
| Rv0340/- | Rv0570/nrdZ | |
| Fe_supp_jason_reseq | 0.474 | 0.022 |
| low_pH_jason_reseq | -0.062 | 0.694 |
| NO_jason_reseq | -0.869 | 0.599 |
| B6_jason_reseq | 1.745 | 0.881 |
| MHCII_jason_reseq | 1.53 | 1.017 |
| Isoniazid02 | -3.414 | -0.597 |
| Rifampicin4 | 0.923 | 0.217 |
| Ethambutol3 | -3.051 | -0.499 |
| Meropenem3 | -2.71 | -1.562 |
| Vancomycin16 | 0.191 | -0.756 |
| Rv2680_day32 | 0.205 | 0.579 |
| H37Rv_KO_MarP | -0.804 | 0.155 |
| hypoxia_3wks | -1.615 | -0.778 |
| hypoxia_6wks | 0.236 | 0.0 |
| glycerol | -4.86 | -0.424 |
| cholesterol | -2.267 | -0.813 |
| AJ | -0.541 | -0.565 |
| Bibs02 | -0.885 | 0.441 |
| Bibs02c | 0.612 | -0.321 |
| BL6 | -0.861 | -0.079 |
| BL6a | -0.075 | -0.874 |
| BXD01 | -2.151 | -0.615 |
| BXD010 | -1.463 | -1.262 |
| BXD011 | -2.5 | -0.994 |
| BXD03 | -1.621 | -0.364 |
| BXD04 | -0.766 | -0.666 |
| BXD05 | -1.06 | -0.027 |
| BXD06 | -1.764 | -0.616 |
| BXD07 | -0.683 | -0.582 |
| BXD08 | -0.383 | -0.533 |
| BXD09 | -1.711 | -0.741 |
| CAST | 0.19 | -0.112 |
| CCcont | -1.01 | -0.612 |
| DS01 | 0.474 | 0.048 |
| DS02 | 0.167 | 0.17 |
| DS04 | -0.162 | 0.58 |
| DS0c | -1.158 | 0.264 |
| GP01 | -0.095 | -0.543 |
| GP02 | 0.539 | -0.239 |
| GP0c | -0.567 | -0.508 |
| NOD | 0.334 | -0.666 |
| NZO | -0.289 | -0.608 |
| PWK | 1.171 | 0.117 |
| H37Rv_KO_CtpC | -0.884 | -0.249 |
| H37Rv_KO_CtpD | -1.423 | -0.572 |
| H37Rv_KO_Rv1272 | -2.17 | -1.294 |
| H37Rv_KO_SugABC | -1.796 | -0.942 |
| H37Rv_KO_MbtN | -0.956 | 0.18 |
| Trans05 | -3.511 | 0.35 |
| macrophage_unactivated | -1.667 | -0.789 |
| IL1 | -0.884 | -0.567 |
| Rapamycin | 0.341 | -0.411 |
| Tcell | -0.459 | -0.622 |
| GMCSF | -0.209 | -0.504 |
| IFNab | 0.281 | -0.157 |
| IFNg | -0.612 | -0.104 |
| IFNg_GMCSF1 | 1.524 | 0.531 |
| Rv1432_day32 | -0.289 | -0.218 |
| Rv1565c_day32 | 0.0 | 0.785 |
| secA2_input | 0.98 | 0.432 |
| delta_Rv3594 | -0.089 | 0.581 |
| delta_Rv3717 | 0.0 | 0.38 |
| delta_Rv3811 | -0.021 | 0.402 |
| delta_Rv0954 | 0.804 | 0.194 |
| PonA1 | -3.563 | -0.046 |
| EccD1_KO | -2.151 | 0.553 |
| EspI_KO | -0.356 | 0.051 |
| PE35_KO | -3.034 | 0.58 |
| PPE68_KO | -1.456 | 0.589 |
| glycerol2 | 0.168 | 1.04 |
| lignocerate | 0.882 | 1.727 |
| oleate | -1.509 | 0.245 |
| phosphatidylcholine | -0.09 | 1.147 |
| acetate | 0.555 | 1.072 |
| glucAc | 1.681 | 1.2 |
| Rv0950ko | -2.135 | 0.41 |
| Rv1096ko | -1.423 | 0.648 |
| Rv3684ko | -0.95 | 0.55 |
| delta_otsA_trehalose | -0.694 | 0.023 |