TnSeqCorr

Top 10 genes with highest correlation to Rv0300/vapB2:

update plotcorrelationlink to info on gene
Rv1976c/- (cc=0.4675) info on Rv1976c/-
Rv0633c/- (cc=0.4561) info on Rv0633c/-
Rv0435c/- (cc=0.4317) info on Rv0435c/-
Rv0778/cyp126 (cc=0.4231) info on Rv0778/cyp126
Rv1358/- (cc=0.4093) info on Rv1358/-
Rv0936/pstA2 (cc=0.4087) info on Rv0936/pstA2
Rv2320c/rocE (cc=0.4081) info on Rv2320c/rocE
Rv1541c/lprI (cc=0.3939) info on Rv1541c/lprI
Rv0388c/PPE9 (cc=0.3873) info on Rv0388c/PPE9
Rv1363c/- (cc=0.3835) info on Rv1363c/-

Correlation of Rv0300/vapB2 with Rv1976c/-

Normalized LFCs for Rv0300/vapB2:
(description and provenance of datasets)
Rv0300/vapB2Rv1976c/-
Fe_supp_jason_reseq

0.464

0.696

low_pH_jason_reseq

-0.924

1.633

NO_jason_reseq

-0.305

-0.564

B6_jason_reseq

0.449

0.857

MHCII_jason_reseq

0.094

1.33

Isoniazid02

-0.214

-0.138

Rifampicin4

-0.16

-1.148

Ethambutol3

0.029

-0.413

Meropenem3

0.422

0.086

Vancomycin16

-0.098

-0.411

Rv2680_day32

-0.998

-2.312

H37Rv_KO_MarP

-0.378

0.814

hypoxia_3wks

-0.682

-0.411

hypoxia_6wks

-0.551

-0.497

glycerol

0.553

-0.24

cholesterol

0.867

0.392

AJ

0.44

1.676

Bibs02

0.327

0.947

Bibs02c

0.026

0.67

BL6

-1.319

0.186

BL6a

0.504

0.779

BXD01

-0.518

-1.329

BXD010

-0.679

-0.049

BXD011

-0.288

-0.459

BXD03

-0.188

-0.351

BXD04

-0.183

-0.328

BXD05

0.488

-0.168

BXD06

-0.314

-0.223

BXD07

0.379

0.559

BXD08

-0.321

-0.861

BXD09

-0.228

0.324

CAST

0.904

0.649

CCcont

-0.731

-0.116

DS01

0.053

1.61

DS02

0.884

1.224

DS04

-1.216

-0.944

DS0c

0.107

0.627

GP01

-0.693

-1.305

GP02

-1.436

-2.7

GP0c

-0.722

-1.427

NOD

0.477

0.239

NZO

0.168

-0.705

PWK

0.219

-0.055

H37Rv_KO_CtpC

0.0

-0.211

H37Rv_KO_CtpD

0.2

1.572

H37Rv_KO_Rv1272

-0.461

1.429

H37Rv_KO_SugABC

0.119

-1.412

H37Rv_KO_MbtN

-0.46

-1.964

Trans05

-0.193

0.306

macrophage_unactivated

-0.609

0.735

IL1

0.451

0.569

Rapamycin

0.479

0.516

Tcell

0.424

0.587

GMCSF

0.227

0.428

IFNab

0.599

-0.127

IFNg

0.51

0.414

IFNg_GMCSF1

0.386

-0.044

Rv1432_day32

-0.645

-1.516

Rv1565c_day32

1.42

1.387

secA2_input

-0.908

0.269

delta_Rv3594

-0.434

2.527

delta_Rv3717

-0.888

2.834

delta_Rv3811

0.813

1.417

delta_Rv0954

0.703

2.398

PonA1

0.935

3.281

EccD1_KO

0.559

0.454

EspI_KO

-0.194

-1.298

PE35_KO

0.032

-0.583

PPE68_KO

-0.278

-0.704

glycerol2

-0.189

1.065

lignocerate

-0.231

0.11

oleate

-0.204

0.278

phosphatidylcholine

-0.59

0.564

acetate

-1.014

0.535

glucAc

-0.841

0.488

Rv0950ko

0.778

1.737

Rv1096ko

0.483

1.2

Rv3684ko

-0.183

0.265

delta_otsA_trehalose

-1.349

-2.64