Top 10 genes with highest correlation to Rv0203/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3170/aofH | (cc=0.5931) | info on Rv3170/aofH |
| Rv2089c/pepE | (cc=0.5615) | info on Rv2089c/pepE |
| Rv1638A/- | (cc=0.5602) | info on Rv1638A/- |
| Rv0263c/- | (cc=0.5548) | info on Rv0263c/- |
| Rv0481c/- | (cc=0.5542) | info on Rv0481c/- |
| Rv3093c/- | (cc=0.5509) | info on Rv3093c/- |
| Rv3078/hab | (cc=0.5419) | info on Rv3078/hab |
| Rv0377/- | (cc=0.5303) | info on Rv0377/- |
| Rv2285/- | (cc=0.5295) | info on Rv2285/- |
| Rv2831/echA16 | (cc=0.526) | info on Rv2831/echA16 |
Correlation of Rv0203/- with Rv2089c/pepE
Normalized LFCs for Rv0203/-:
(description and provenance of datasets)
| Rv0203/- | Rv2089c/pepE | |
| Fe_supp_jason_reseq | 0.475 | 0.813 |
| low_pH_jason_reseq | 0.035 | -0.179 |
| NO_jason_reseq | 0.835 | 0.622 |
| B6_jason_reseq | 1.205 | 0.61 |
| MHCII_jason_reseq | -0.307 | 0.0 |
| Isoniazid02 | 1.561 | 0.973 |
| Rifampicin4 | 1.097 | 0.0 |
| Ethambutol3 | 0.226 | 3.413 |
| Meropenem3 | 0.689 | 2.671 |
| Vancomycin16 | -0.273 | 0.796 |
| Rv2680_day32 | 0.49 | -0.471 |
| H37Rv_KO_MarP | -0.188 | -0.785 |
| hypoxia_3wks | 0.108 | 0.136 |
| hypoxia_6wks | 1.666 | 0.702 |
| glycerol | 1.069 | -0.089 |
| cholesterol | 0.632 | 0.627 |
| AJ | 0.276 | 0.131 |
| Bibs02 | 1.258 | 0.51 |
| Bibs02c | -0.035 | 0.784 |
| BL6 | -1.154 | 0.589 |
| BL6a | -1.319 | -0.181 |
| BXD01 | -2.062 | -1.104 |
| BXD010 | -0.726 | -0.435 |
| BXD011 | -1.142 | -1.578 |
| BXD03 | -1.759 | -1.883 |
| BXD04 | -2.157 | -1.268 |
| BXD05 | -0.045 | -0.758 |
| BXD06 | -1.304 | -1.269 |
| BXD07 | -0.661 | -0.338 |
| BXD08 | -1.542 | -1.042 |
| BXD09 | -0.921 | -0.863 |
| CAST | 0.262 | 0.162 |
| CCcont | -2.222 | -0.997 |
| DS01 | 0.063 | 0.409 |
| DS02 | 0.481 | -0.065 |
| DS04 | 1.654 | -0.438 |
| DS0c | 0.31 | 0.506 |
| GP01 | -0.647 | -0.44 |
| GP02 | -0.369 | -1.364 |
| GP0c | -1.384 | -1.19 |
| NOD | -0.417 | 0.576 |
| NZO | 0.948 | 0.37 |
| PWK | -1.188 | 0.388 |
| H37Rv_KO_CtpC | -0.706 | -1.486 |
| H37Rv_KO_CtpD | 0.896 | 0.435 |
| H37Rv_KO_Rv1272 | -0.501 | -0.76 |
| H37Rv_KO_SugABC | -1.787 | 0.588 |
| H37Rv_KO_MbtN | -2.03 | -1.38 |
| Trans05 | -1.189 | -0.183 |
| macrophage_unactivated | -1.016 | -0.641 |
| IL1 | -0.208 | -0.217 |
| Rapamycin | 0.442 | -1.249 |
| Tcell | -0.469 | -1.03 |
| GMCSF | 0.478 | 0.0 |
| IFNab | -0.169 | -0.296 |
| IFNg | -0.305 | -0.262 |
| IFNg_GMCSF1 | -0.314 | -0.553 |
| Rv1432_day32 | 1.073 | -0.24 |
| Rv1565c_day32 | -1.899 | 0.496 |
| secA2_input | 0.809 | 1.188 |
| delta_Rv3594 | 1.776 | 1.634 |
| delta_Rv3717 | 1.547 | 0.594 |
| delta_Rv3811 | 2.425 | 1.866 |
| delta_Rv0954 | 1.371 | 0.0 |
| PonA1 | 1.686 | 0.728 |
| EccD1_KO | 0.809 | 0.51 |
| EspI_KO | 0.482 | 1.343 |
| PE35_KO | 0.963 | 0.621 |
| PPE68_KO | 0.39 | 1.731 |
| glycerol2 | -2.364 | -1.131 |
| lignocerate | -2.288 | -1.047 |
| oleate | -1.52 | -0.872 |
| phosphatidylcholine | -1.765 | -0.798 |
| acetate | -0.377 | -0.487 |
| glucAc | -1.84 | -0.229 |
| Rv0950ko | 1.143 | -0.347 |
| Rv1096ko | 1.333 | -0.259 |
| Rv3684ko | 2.292 | -0.282 |
| delta_otsA_trehalose | -2.108 | -1.358 |