Top 10 genes with highest correlation to Rv0117/oxyS:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0470A/- | (cc=0.4858) | info on Rv0470A/- |
| Rv0390/- | (cc=0.483) | info on Rv0390/- |
| Rv1706c/PPE23 | (cc=0.4692) | info on Rv1706c/PPE23 |
| Rv2989/- | (cc=0.4681) | info on Rv2989/- |
| Rv0418/lpqL | (cc=0.4612) | info on Rv0418/lpqL |
| Rv0449c/- | (cc=0.4574) | info on Rv0449c/- |
| Rv0869c/moaA2 | (cc=0.4565) | info on Rv0869c/moaA2 |
| Rv3197/- | (cc=0.4533) | info on Rv3197/- |
| Rv0435c/- | (cc=0.4507) | info on Rv0435c/- |
| Rv0247c/- | (cc=0.45) | info on Rv0247c/- |
Correlation of Rv0117/oxyS with Rv0449c/-
Normalized LFCs for Rv0117/oxyS:
(description and provenance of datasets)
| Rv0117/oxyS | Rv0449c/- | |
| Fe_supp_jason_reseq | 0.025 | -0.355 |
| low_pH_jason_reseq | -0.423 | 0.243 |
| NO_jason_reseq | -0.99 | 0.092 |
| B6_jason_reseq | -0.517 | -0.243 |
| MHCII_jason_reseq | 0.691 | 0.286 |
| Isoniazid02 | 0.051 | 0.01 |
| Rifampicin4 | -0.352 | 0.2 |
| Ethambutol3 | 0.022 | 0.106 |
| Meropenem3 | 1.848 | 0.882 |
| Vancomycin16 | 0.273 | 0.037 |
| Rv2680_day32 | -2.003 | 0.392 |
| H37Rv_KO_MarP | 0.12 | 0.268 |
| hypoxia_3wks | -0.056 | -0.14 |
| hypoxia_6wks | 0.167 | -0.478 |
| glycerol | -1.463 | 0.031 |
| cholesterol | -1.51 | -0.441 |
| AJ | -0.963 | -0.313 |
| Bibs02 | -1.522 | -0.493 |
| Bibs02c | -1.214 | -0.017 |
| BL6 | -1.878 | -0.355 |
| BL6a | -1.179 | -0.319 |
| BXD01 | -1.084 | -1.063 |
| BXD010 | -0.056 | -0.828 |
| BXD011 | -1.701 | -0.3 |
| BXD03 | -0.785 | -0.686 |
| BXD04 | -0.206 | -0.524 |
| BXD05 | -1.927 | -0.532 |
| BXD06 | -1.013 | -0.711 |
| BXD07 | -1.32 | -1.096 |
| BXD08 | -1.185 | -0.602 |
| BXD09 | -1.197 | -1.195 |
| CAST | -0.732 | -0.36 |
| CCcont | -0.936 | -1.146 |
| DS01 | -0.125 | 0.115 |
| DS02 | -0.498 | 0.098 |
| DS04 | -0.343 | 0.03 |
| DS0c | 0.091 | 0.214 |
| GP01 | 0.2 | 0.582 |
| GP02 | -1.014 | 0.674 |
| GP0c | -0.574 | 0.11 |
| NOD | -0.714 | -0.096 |
| NZO | 0.181 | 0.559 |
| PWK | -0.578 | 0.016 |
| H37Rv_KO_CtpC | -0.896 | -0.486 |
| H37Rv_KO_CtpD | 0.654 | -0.48 |
| H37Rv_KO_Rv1272 | -0.928 | -0.172 |
| H37Rv_KO_SugABC | -0.107 | -0.497 |
| H37Rv_KO_MbtN | -0.214 | 0.194 |
| Trans05 | -0.576 | -0.078 |
| macrophage_unactivated | -0.29 | -0.022 |
| IL1 | -0.273 | 0.136 |
| Rapamycin | -0.353 | -0.166 |
| Tcell | -0.222 | -0.906 |
| GMCSF | -0.119 | 0.238 |
| IFNab | -0.206 | 0.139 |
| IFNg | -0.246 | 0.468 |
| IFNg_GMCSF1 | 0.204 | -0.085 |
| Rv1432_day32 | -0.945 | -0.291 |
| Rv1565c_day32 | 0.39 | 0.199 |
| secA2_input | 0.847 | 1.011 |
| delta_Rv3594 | -1.091 | 0.33 |
| delta_Rv3717 | -0.571 | 0.579 |
| delta_Rv3811 | -0.923 | 0.278 |
| delta_Rv0954 | -0.037 | 0.587 |
| PonA1 | -0.31 | 0.748 |
| EccD1_KO | -0.756 | -0.076 |
| EspI_KO | 0.536 | 0.396 |
| PE35_KO | -0.747 | 0.184 |
| PPE68_KO | -0.531 | -0.112 |
| glycerol2 | -0.015 | 0.0 |
| lignocerate | -0.527 | -0.431 |
| oleate | 0.36 | 0.347 |
| phosphatidylcholine | -0.307 | -0.296 |
| acetate | -0.894 | -0.474 |
| glucAc | -0.493 | -0.823 |
| Rv0950ko | 0.47 | 0.624 |
| Rv1096ko | 0.0 | 0.374 |
| Rv3684ko | 0.429 | 0.678 |
| delta_otsA_trehalose | -1.644 | 0.048 |