Top 10 genes with highest correlation to Rv0115/hddA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0399c/lpqK | (cc=0.6841) | info on Rv0399c/lpqK |
| Rv0940c/- | (cc=0.6452) | info on Rv0940c/- |
| Rv0194/- | (cc=0.6193) | info on Rv0194/- |
| Rv1501/- | (cc=0.6143) | info on Rv1501/- |
| Rv0160c/PE4 | (cc=0.5854) | info on Rv0160c/PE4 |
| Rv0342/iniA | (cc=0.5757) | info on Rv0342/iniA |
| Rv3508/PE_PGRS54 | (cc=0.5622) | info on Rv3508/PE_PGRS54 |
| Rv3329/- | (cc=0.553) | info on Rv3329/- |
| Rv0343/iniC | (cc=0.5332) | info on Rv0343/iniC |
| Rv3191c/- | (cc=0.5259) | info on Rv3191c/- |
Correlation of Rv0115/hddA with Rv0343/iniC
Normalized LFCs for Rv0115/hddA:
(description and provenance of datasets)
| Rv0115/hddA | Rv0343/iniC | |
| Fe_supp_jason_reseq | -0.505 | -0.876 |
| low_pH_jason_reseq | 0.028 | 0.04 |
| NO_jason_reseq | 0.478 | 1.239 |
| B6_jason_reseq | 0.344 | -0.246 |
| MHCII_jason_reseq | 0.484 | 0.652 |
| Isoniazid02 | -2.546 | -1.734 |
| Rifampicin4 | 0.495 | 0.609 |
| Ethambutol3 | -2.227 | -2.748 |
| Meropenem3 | -1.848 | -2.168 |
| Vancomycin16 | -0.921 | -0.783 |
| Rv2680_day32 | 0.104 | 0.926 |
| H37Rv_KO_MarP | 0.574 | 1.442 |
| hypoxia_3wks | 0.152 | -0.431 |
| hypoxia_6wks | 0.906 | -0.123 |
| glycerol | 0.521 | 0.635 |
| cholesterol | 0.021 | 0.014 |
| AJ | 0.333 | 0.064 |
| Bibs02 | -0.864 | 0.034 |
| Bibs02c | 0.191 | -0.508 |
| BL6 | -0.218 | -0.024 |
| BL6a | 0.453 | 0.212 |
| BXD01 | 0.17 | 0.128 |
| BXD010 | 0.323 | -0.223 |
| BXD011 | -0.463 | -0.113 |
| BXD03 | 0.159 | -0.593 |
| BXD04 | 0.0 | 0.432 |
| BXD05 | 0.0 | 0.013 |
| BXD06 | -0.165 | -0.202 |
| BXD07 | 0.19 | -0.136 |
| BXD08 | 0.173 | 0.826 |
| BXD09 | 0.128 | 0.984 |
| CAST | -0.23 | 0.38 |
| CCcont | 0.064 | -0.473 |
| DS01 | 0.609 | -0.282 |
| DS02 | 0.284 | 0.158 |
| DS04 | 0.489 | -0.294 |
| DS0c | -0.148 | 0.605 |
| GP01 | 0.468 | 0.08 |
| GP02 | -0.338 | -0.242 |
| GP0c | 0.469 | -0.102 |
| NOD | -0.511 | 0.753 |
| NZO | -0.136 | 0.484 |
| PWK | 0.594 | 0.446 |
| H37Rv_KO_CtpC | -0.37 | -0.473 |
| H37Rv_KO_CtpD | 1.079 | 0.93 |
| H37Rv_KO_Rv1272 | 0.109 | 0.52 |
| H37Rv_KO_SugABC | 1.569 | -0.654 |
| H37Rv_KO_MbtN | -0.653 | -1.606 |
| Trans05 | 0.575 | 1.367 |
| macrophage_unactivated | 0.11 | 0.098 |
| IL1 | -0.747 | 0.0 |
| Rapamycin | -0.709 | -0.976 |
| Tcell | 0.417 | 0.101 |
| GMCSF | -0.61 | -0.737 |
| IFNab | -0.514 | 0.369 |
| IFNg | 0.139 | 0.97 |
| IFNg_GMCSF1 | -0.694 | 1.511 |
| Rv1432_day32 | 0.029 | -0.416 |
| Rv1565c_day32 | -0.36 | 0.719 |
| secA2_input | -0.517 | -0.216 |
| delta_Rv3594 | -0.448 | -0.854 |
| delta_Rv3717 | -0.96 | -1.719 |
| delta_Rv3811 | -0.629 | 0.326 |
| delta_Rv0954 | -0.366 | -0.085 |
| PonA1 | -0.806 | 0.048 |
| EccD1_KO | -1.246 | 0.194 |
| EspI_KO | -0.422 | -0.362 |
| PE35_KO | -0.627 | -0.143 |
| PPE68_KO | -0.659 | -0.579 |
| glycerol2 | 0.332 | 0.104 |
| lignocerate | 0.544 | 0.125 |
| oleate | 0.072 | 0.384 |
| phosphatidylcholine | 0.392 | -0.098 |
| acetate | 0.258 | -0.158 |
| glucAc | 0.389 | -0.267 |
| Rv0950ko | 0.241 | -0.087 |
| Rv1096ko | -0.642 | -0.133 |
| Rv3684ko | -1.055 | 0.0 |
| delta_otsA_trehalose | -0.019 | -1.182 |