Top 10 genes with highest correlation to Rv0112/gca:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2430c/PPE41 | (cc=0.6914) | info on Rv2430c/PPE41 |
| Rv1918c/PPE35 | (cc=0.6414) | info on Rv1918c/PPE35 |
| Rv2735c/- | (cc=0.6295) | info on Rv2735c/- |
| Rv0907/- | (cc=0.6282) | info on Rv0907/- |
| Rv0469/umaA | (cc=0.6168) | info on Rv0469/umaA |
| Rv3218/- | (cc=0.6008) | info on Rv3218/- |
| Rv0059/- | (cc=0.5935) | info on Rv0059/- |
| Rv1505c/- | (cc=0.5928) | info on Rv1505c/- |
| Rv1059/- | (cc=0.5885) | info on Rv1059/- |
| Rv3864/espE | (cc=0.587) | info on Rv3864/espE |
Correlation of Rv0112/gca with Rv2430c/PPE41
Normalized LFCs for Rv0112/gca:
(description and provenance of datasets)
| Rv0112/gca | Rv2430c/PPE41 | |
| Fe_supp_jason_reseq | 0.415 | -0.259 |
| low_pH_jason_reseq | 1.335 | -0.617 |
| NO_jason_reseq | 0.171 | -0.326 |
| B6_jason_reseq | 0.292 | -0.565 |
| MHCII_jason_reseq | -0.342 | -1.222 |
| Isoniazid02 | 0.636 | -0.362 |
| Rifampicin4 | -0.165 | -0.379 |
| Ethambutol3 | 1.454 | -0.539 |
| Meropenem3 | -0.359 | 0.604 |
| Vancomycin16 | 0.157 | -0.541 |
| Rv2680_day32 | -0.383 | -0.546 |
| H37Rv_KO_MarP | -0.223 | 0.78 |
| hypoxia_3wks | 0.53 | -0.016 |
| hypoxia_6wks | 0.142 | -0.558 |
| glycerol | -0.753 | -1.482 |
| cholesterol | -0.469 | -0.355 |
| AJ | 1.239 | 1.329 |
| Bibs02 | -0.682 | 0.293 |
| Bibs02c | 0.887 | -0.441 |
| BL6 | 0.839 | 2.014 |
| BL6a | 1.663 | 1.624 |
| BXD01 | 1.652 | 1.73 |
| BXD010 | 1.81 | 2.268 |
| BXD011 | 2.088 | 2.003 |
| BXD03 | 1.673 | 2.085 |
| BXD04 | 0.581 | 2.116 |
| BXD05 | 0.747 | 2.269 |
| BXD06 | 1.26 | 1.836 |
| BXD07 | 1.073 | 1.829 |
| BXD08 | 0.987 | 1.59 |
| BXD09 | 1.384 | 1.891 |
| CAST | 0.569 | 1.024 |
| CCcont | 0.701 | 1.659 |
| DS01 | 0.236 | 1.092 |
| DS02 | 0.711 | 0.558 |
| DS04 | 0.254 | 0.769 |
| DS0c | 0.815 | 0.509 |
| GP01 | 0.067 | 0.134 |
| GP02 | 0.109 | 2.462 |
| GP0c | 1.478 | 0.343 |
| NOD | 1.054 | 1.447 |
| NZO | 0.548 | 0.483 |
| PWK | 1.088 | 0.872 |
| H37Rv_KO_CtpC | 0.966 | 0.914 |
| H37Rv_KO_CtpD | 1.023 | 1.252 |
| H37Rv_KO_Rv1272 | 1.427 | 1.399 |
| H37Rv_KO_SugABC | 0.976 | 1.91 |
| H37Rv_KO_MbtN | 1.612 | 1.129 |
| Trans05 | 2.074 | 2.226 |
| macrophage_unactivated | 0.139 | 1.076 |
| IL1 | 0.0 | 0.125 |
| Rapamycin | 0.203 | 0.19 |
| Tcell | 0.554 | 0.094 |
| GMCSF | 0.655 | 0.636 |
| IFNab | -0.429 | 0.308 |
| IFNg | 0.345 | 0.537 |
| IFNg_GMCSF1 | 0.779 | 0.688 |
| Rv1432_day32 | -0.164 | -0.428 |
| Rv1565c_day32 | 0.065 | 0.782 |
| secA2_input | -1.342 | -0.891 |
| delta_Rv3594 | 0.035 | -0.571 |
| delta_Rv3717 | 0.141 | -1.178 |
| delta_Rv3811 | -0.219 | -0.265 |
| delta_Rv0954 | -0.726 | -1.172 |
| PonA1 | 0.382 | -0.066 |
| EccD1_KO | -0.572 | -0.625 |
| EspI_KO | -1.132 | -0.331 |
| PE35_KO | -0.755 | -0.726 |
| PPE68_KO | -0.691 | -0.701 |
| glycerol2 | -0.234 | -0.084 |
| lignocerate | -0.374 | -0.073 |
| oleate | 0.474 | 0.234 |
| phosphatidylcholine | -0.056 | 0.041 |
| acetate | -0.17 | 0.017 |
| glucAc | -0.722 | -0.627 |
| Rv0950ko | 0.374 | -0.136 |
| Rv1096ko | -0.48 | -0.22 |
| Rv3684ko | -0.599 | -0.508 |
| delta_otsA_trehalose | 2.09 | 1.428 |