Top 10 genes with highest correlation to Rv0109/PE_PGRS1:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1471/trxB1 | (cc=0.5578) | info on Rv1471/trxB1 |
| Rv0349/- | (cc=0.5432) | info on Rv0349/- |
| Rv3143/- | (cc=0.5339) | info on Rv3143/- |
| Rv3232c/ppk2 | (cc=0.521) | info on Rv3232c/ppk2 |
| Rv2317/uspB | (cc=0.5163) | info on Rv2317/uspB |
| Rv0042c/- | (cc=0.5114) | info on Rv0042c/- |
| Rv2147c/- | (cc=0.5005) | info on Rv2147c/- |
| Rv2842c/- | (cc=0.4974) | info on Rv2842c/- |
| Rv3149/nuoE | (cc=0.483) | info on Rv3149/nuoE |
| Rv3152/nuoH | (cc=0.4813) | info on Rv3152/nuoH |
Correlation of Rv0109/PE_PGRS1 with Rv2842c/-
Normalized LFCs for Rv0109/PE_PGRS1:
(description and provenance of datasets)
| Rv0109/PE_PGRS1 | Rv2842c/- | |
| Fe_supp_jason_reseq | -1.609 | -3.443 |
| low_pH_jason_reseq | 0.646 | 1.691 |
| NO_jason_reseq | -0.541 | 1.486 |
| B6_jason_reseq | -1.364 | -1.81 |
| MHCII_jason_reseq | -0.516 | -2.409 |
| Isoniazid02 | -0.626 | 0.156 |
| Rifampicin4 | -0.181 | 1.27 |
| Ethambutol3 | -0.054 | 1.282 |
| Meropenem3 | 0.026 | -0.289 |
| Vancomycin16 | -0.239 | 1.027 |
| Rv2680_day32 | 0.271 | 1.583 |
| H37Rv_KO_MarP | -0.349 | 0.563 |
| hypoxia_3wks | -0.367 | -1.132 |
| hypoxia_6wks | -0.731 | -1.879 |
| glycerol | -1.001 | -0.184 |
| cholesterol | -0.034 | -0.132 |
| AJ | 0.156 | -0.442 |
| Bibs02 | -0.535 | -0.348 |
| Bibs02c | -0.1 | -0.399 |
| BL6 | 1.203 | 2.496 |
| BL6a | 0.663 | 3.075 |
| BXD01 | 1.074 | 2.362 |
| BXD010 | 0.882 | 2.261 |
| BXD011 | 1.237 | 2.526 |
| BXD03 | 0.407 | 2.982 |
| BXD04 | 0.711 | 1.383 |
| BXD05 | 1.095 | 2.834 |
| BXD06 | 0.675 | 3.053 |
| BXD07 | 1.294 | 2.177 |
| BXD08 | 0.533 | 3.592 |
| BXD09 | 0.789 | 1.44 |
| CAST | 0.205 | 1.458 |
| CCcont | 1.465 | 2.376 |
| DS01 | -0.229 | -0.216 |
| DS02 | 0.372 | 0.0 |
| DS04 | 0.131 | 0.707 |
| DS0c | -0.211 | -0.413 |
| GP01 | -0.787 | -0.188 |
| GP02 | -0.705 | -0.159 |
| GP0c | 0.345 | -0.248 |
| NOD | -0.107 | -0.205 |
| NZO | 0.668 | -0.38 |
| PWK | -0.142 | -0.179 |
| H37Rv_KO_CtpC | -0.038 | 1.957 |
| H37Rv_KO_CtpD | 0.778 | 0.204 |
| H37Rv_KO_Rv1272 | 1.344 | -0.269 |
| H37Rv_KO_SugABC | 0.857 | 2.45 |
| H37Rv_KO_MbtN | -0.211 | 0.0 |
| Trans05 | 1.68 | 1.296 |
| macrophage_unactivated | 0.429 | -2.14 |
| IL1 | 0.184 | -2.791 |
| Rapamycin | -0.098 | -1.936 |
| Tcell | -0.489 | -0.857 |
| GMCSF | -0.084 | -2.485 |
| IFNab | 0.048 | -0.381 |
| IFNg | 0.246 | -1.446 |
| IFNg_GMCSF1 | 0.776 | -2.608 |
| Rv1432_day32 | 1.119 | 0.0 |
| Rv1565c_day32 | 0.115 | -0.415 |
| secA2_input | -0.045 | 1.349 |
| delta_Rv3594 | 1.127 | 1.869 |
| delta_Rv3717 | 1.333 | 2.815 |
| delta_Rv3811 | 0.909 | 3.098 |
| delta_Rv0954 | 0.721 | -1.383 |
| PonA1 | 0.705 | -0.799 |
| EccD1_KO | 1.089 | 2.144 |
| EspI_KO | -0.53 | 2.997 |
| PE35_KO | -0.403 | -1.415 |
| PPE68_KO | -0.288 | 0.47 |
| glycerol2 | 0.82 | -0.82 |
| lignocerate | 0.872 | 0.185 |
| oleate | 0.048 | -1.202 |
| phosphatidylcholine | 0.471 | -0.508 |
| acetate | 0.934 | 1.303 |
| glucAc | 1.169 | 0.762 |
| Rv0950ko | 1.022 | -0.482 |
| Rv1096ko | 0.582 | 0.926 |
| Rv3684ko | 0.796 | 2.607 |
| delta_otsA_trehalose | 0.536 | 0.239 |