Top 10 genes with highest correlation to Rv0008c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3353c/- | (cc=0.727) | info on Rv3353c/- |
| Rv2638/- | (cc=0.7213) | info on Rv2638/- |
| Rv0278c/PE_PGRS3 | (cc=0.7031) | info on Rv0278c/PE_PGRS3 |
| Rv3366/spoU | (cc=0.6926) | info on Rv3366/spoU |
| Rv2007c/fdxA | (cc=0.6455) | info on Rv2007c/fdxA |
| Rv0850/- | (cc=0.6451) | info on Rv0850/- |
| Rv0089/- | (cc=0.6428) | info on Rv0089/- |
| Rv3354/- | (cc=0.6413) | info on Rv3354/- |
| Rv3643/- | (cc=0.633) | info on Rv3643/- |
| Rv2633c/- | (cc=0.6326) | info on Rv2633c/- |
Correlation of Rv0008c/- with Rv2007c/fdxA
Normalized LFCs for Rv0008c/-:
(description and provenance of datasets)
| Rv0008c/- | Rv2007c/fdxA | |
| Fe_supp_jason_reseq | -2.052 | -0.204 |
| low_pH_jason_reseq | -0.85 | -1.392 |
| NO_jason_reseq | 1.575 | -0.11 |
| B6_jason_reseq | 2.298 | 1.433 |
| MHCII_jason_reseq | 1.965 | 0.95 |
| Isoniazid02 | 0.56 | 1.404 |
| Rifampicin4 | 0.412 | -0.504 |
| Ethambutol3 | 0.27 | 0.536 |
| Meropenem3 | -0.231 | 0.058 |
| Vancomycin16 | 0.979 | -0.151 |
| Rv2680_day32 | 0.0 | 0.81 |
| H37Rv_KO_MarP | 0.113 | 0.46 |
| hypoxia_3wks | -0.702 | -0.742 |
| hypoxia_6wks | -0.1 | -0.472 |
| glycerol | 0.856 | 0.009 |
| cholesterol | 0.366 | 0.168 |
| AJ | 0.449 | 0.39 |
| Bibs02 | 1.347 | -0.584 |
| Bibs02c | -0.973 | -0.608 |
| BL6 | -0.648 | -0.133 |
| BL6a | -3.221 | -1.979 |
| BXD01 | -1.653 | -0.994 |
| BXD010 | -2.357 | -2.471 |
| BXD011 | -2.539 | -0.939 |
| BXD03 | -1.169 | -1.307 |
| BXD04 | -3.059 | -1.409 |
| BXD05 | -0.609 | -0.376 |
| BXD06 | -1.85 | -0.973 |
| BXD07 | -1.757 | -1.338 |
| BXD08 | -1.279 | -1.695 |
| BXD09 | -1.863 | -1.372 |
| CAST | 0.349 | 0.507 |
| CCcont | -0.603 | -0.943 |
| DS01 | 0.186 | 0.464 |
| DS02 | -0.263 | 0.545 |
| DS04 | 1.214 | 0.275 |
| DS0c | -0.955 | 0.859 |
| GP01 | 0.797 | -2.45 |
| GP02 | -0.164 | -2.63 |
| GP0c | 1.374 | -1.015 |
| NOD | 0.762 | 0.433 |
| NZO | -0.241 | 0.585 |
| PWK | 0.965 | 0.618 |
| H37Rv_KO_CtpC | -0.258 | -0.737 |
| H37Rv_KO_CtpD | 1.101 | -0.202 |
| H37Rv_KO_Rv1272 | 0.282 | 1.003 |
| H37Rv_KO_SugABC | 0.062 | -1.786 |
| H37Rv_KO_MbtN | -1.337 | -0.852 |
| Trans05 | -1.893 | 0.514 |
| macrophage_unactivated | -0.83 | -1.042 |
| IL1 | -1.978 | -1.317 |
| Rapamycin | -0.43 | -0.46 |
| Tcell | -2.923 | -1.496 |
| GMCSF | -1.993 | 0.436 |
| IFNab | -2.283 | -0.795 |
| IFNg | -3.127 | 0.337 |
| IFNg_GMCSF1 | -1.034 | 1.603 |
| Rv1432_day32 | 0.755 | 0.0 |
| Rv1565c_day32 | 0.0 | -0.327 |
| secA2_input | -2.232 | -1.791 |
| delta_Rv3594 | 0.601 | -0.376 |
| delta_Rv3717 | 1.058 | -0.019 |
| delta_Rv3811 | -1.393 | -0.758 |
| delta_Rv0954 | -0.368 | -0.397 |
| PonA1 | 0.12 | -2.163 |
| EccD1_KO | -0.362 | 0.46 |
| EspI_KO | -0.893 | 0.522 |
| PE35_KO | -0.248 | 0.837 |
| PPE68_KO | 0.362 | 0.79 |
| glycerol2 | 2.742 | 2.254 |
| lignocerate | 3.004 | 3.177 |
| oleate | 0.788 | -0.105 |
| phosphatidylcholine | 2.22 | 2.724 |
| acetate | 4.201 | 3.607 |
| glucAc | 2.715 | 3.073 |
| Rv0950ko | 1.158 | 2.174 |
| Rv1096ko | 1.583 | 1.167 |
| Rv3684ko | 2.103 | 2.394 |
| delta_otsA_trehalose | 0.711 | 3.412 |