TB Genome Annotation Portal

Rv1853 (ureD)

• Current annotations:
  • TBCAP: (community-based annotations - see table at bottom of page)
  • TBDB: urease accessory protein
  • REFSEQ: urease accessory protein ureD
  • PATRIC: Urease accessory protein UreD
  • TUBERCULIST: Probable urease accessory protein UreD
  • NCBI: Probable urease accessory protein UreD
  • updated information (H37Rv4):
    • gene name: ureD
    • function:
    • reference:
• Type: Not Target
• Start: 2101022
• End: 2101648
• Operon:


• Trans-membrane region:
  
• Role: I.A.2 - Amino acids and amines
• GO terms:
  • GO:0016151 - nickel cation binding (Uniprot)
  • GO:0006807 - nitrogen compound metabolic process (Uniprot)
• Reaction(s) (based on iSM810 metabolic model):
• Gene Expression Profile (Transcriptional Responses to Drugs; Boshoff et al, 2004)
• Gene Modules extracted from cluster analysis of 249 transcriptomic datasets using ICA
• Orthologs among selected mycobacteria
• Protein structure:
• Search for Homologs in PDB
• Top 10 Homologs in PDB (as of Nov 2020): (none with >35% aa id)
• Links to additional information on ureD:
  • TBDB (updated)
  • Phyre2 structure prediction, model: final.casp.pdb (from Mao et al, 2013)
  • UniProt
  • AlphaFold model
  • Vulnerability = 0.728 (from Jeremy Rock's lab)
  • KEGG - nucleotide and amino acid sequences of gene
  • Mycobrowser
  • PATRIC
  • BioCyc
  • Systems Biology

Amino Acid Sequence

VVASPNRLPRIDCRGGVQARRTAPDTVHLVSAAATPLGGDTMRIRVIVERGAQLRLRSAAATVALPGVDTLTSHAHWEIDVTGTLDVDLEPTVVAASARH
LSHATLRLHDDGRVRLRERVQIGRCNEREGFWSSSLQADRHGRPLLRHRVELGAGSLADDVIAAPRATISELRYPATAFTDAIDARSTVLALAGGGTLST
WQADRLPG

Additional Information