Top 10 genes with highest correlation to Rv3729/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2402/- | (cc=0.5811) | info on Rv2402/- |
| Rv2016/- | (cc=0.562) | info on Rv2016/- |
| Rv1378c/- | (cc=0.5531) | info on Rv1378c/- |
| Rv1243c/PE_PGRS23 | (cc=0.5388) | info on Rv1243c/PE_PGRS23 |
| Rv0139/- | (cc=0.5383) | info on Rv0139/- |
| Rv0278c/PE_PGRS3 | (cc=0.5318) | info on Rv0278c/PE_PGRS3 |
| Rv3056/dinP | (cc=0.5265) | info on Rv3056/dinP |
| Rv0656c/vapC6 | (cc=0.5208) | info on Rv0656c/vapC6 |
| Rv1632c/- | (cc=0.5208) | info on Rv1632c/- |
| Rv2351c/plcA | (cc=0.516) | info on Rv2351c/plcA |
Correlation of Rv3729/- with Rv2402/-
Normalized LFCs for Rv3729/-:
(description and provenance of datasets)
| Rv3729/- | Rv2402/- | |
| Fe_supp_jason_reseq | 0.191 | 0.208 |
| low_pH_jason_reseq | -0.248 | -0.125 |
| NO_jason_reseq | -0.52 | 0.021 |
| B6_jason_reseq | 0.243 | 0.748 |
| MHCII_jason_reseq | 0.015 | 1.001 |
| Isoniazid02 | 0.345 | 1.094 |
| Rifampicin4 | -0.019 | 0.125 |
| Ethambutol3 | 1.465 | 0.817 |
| Meropenem3 | 0.095 | 0.541 |
| Vancomycin16 | 0.159 | 0.146 |
| Rv2680_day32 | 0.712 | -0.218 |
| H37Rv_KO_MarP | 0.303 | 0.013 |
| hypoxia_3wks | 0.036 | -0.518 |
| hypoxia_6wks | 0.035 | -0.065 |
| glycerol | 0.351 | 0.61 |
| cholesterol | 0.968 | 0.13 |
| AJ | 0.615 | 0.763 |
| Bibs02 | -0.4 | 0.183 |
| Bibs02c | -0.099 | 0.582 |
| BL6 | -0.716 | -0.175 |
| BL6a | -0.209 | 0.1 |
| BXD01 | -0.803 | -0.618 |
| BXD010 | -0.28 | -0.64 |
| BXD011 | -0.292 | 0.114 |
| BXD03 | -0.643 | -0.307 |
| BXD04 | -0.588 | -0.187 |
| BXD05 | -0.366 | -0.639 |
| BXD06 | -0.238 | -0.401 |
| BXD07 | -0.206 | -0.527 |
| BXD08 | -0.597 | 0.02 |
| BXD09 | -0.51 | -0.403 |
| CAST | 0.01 | 0.556 |
| CCcont | -0.671 | -0.601 |
| DS01 | 0.039 | 0.46 |
| DS02 | -0.221 | -0.104 |
| DS04 | 0.103 | 0.902 |
| DS0c | 0.547 | 0.746 |
| GP01 | 0.021 | 0.153 |
| GP02 | 0.204 | 0.588 |
| GP0c | 0.387 | 0.495 |
| NOD | 0.405 | 0.679 |
| NZO | 0.774 | 0.301 |
| PWK | 0.52 | 0.631 |
| H37Rv_KO_CtpC | -0.106 | -0.68 |
| H37Rv_KO_CtpD | 0.995 | -0.192 |
| H37Rv_KO_Rv1272 | 0.012 | -0.231 |
| H37Rv_KO_SugABC | 0.227 | 0.288 |
| H37Rv_KO_MbtN | -0.252 | 0.327 |
| Trans05 | -0.062 | -0.577 |
| macrophage_unactivated | -0.742 | -0.341 |
| IL1 | -0.178 | -0.32 |
| Rapamycin | -0.264 | -0.178 |
| Tcell | -0.456 | -0.629 |
| GMCSF | -0.135 | -0.026 |
| IFNab | 0.024 | -0.484 |
| IFNg | -0.206 | -0.208 |
| IFNg_GMCSF1 | 0.129 | -0.405 |
| Rv1432_day32 | 0.111 | -0.155 |
| Rv1565c_day32 | -0.194 | -1.114 |
| secA2_input | 0.117 | -0.626 |
| delta_Rv3594 | -0.102 | -0.303 |
| delta_Rv3717 | -0.152 | -0.072 |
| delta_Rv3811 | 0.064 | -0.476 |
| delta_Rv0954 | 0.411 | 0.048 |
| PonA1 | 0.367 | 0.133 |
| EccD1_KO | 0.253 | 0.033 |
| EspI_KO | -0.066 | 0.057 |
| PE35_KO | -0.166 | -0.239 |
| PPE68_KO | -0.202 | 0.128 |
| glycerol2 | 0.581 | 0.633 |
| lignocerate | 0.934 | 1.305 |
| oleate | -0.172 | 0.06 |
| phosphatidylcholine | 0.301 | 0.878 |
| acetate | 0.71 | 1.48 |
| glucAc | 0.667 | 1.751 |
| Rv0950ko | -0.181 | -0.395 |
| Rv1096ko | -0.392 | -0.148 |
| Rv3684ko | -0.426 | 0.187 |
| delta_otsA_trehalose | -0.334 | -0.305 |