Top 10 genes with highest correlation to Rv3713/cobQ2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3595c/PE_PGRS59 | (cc=0.5107) | info on Rv3595c/PE_PGRS59 |
| Rv3539/PPE63 | (cc=0.5056) | info on Rv3539/PPE63 |
| Rv0687/- | (cc=0.4727) | info on Rv0687/- |
| Rv3900c/- | (cc=0.4478) | info on Rv3900c/- |
| Rv0671/lpqP | (cc=0.4477) | info on Rv0671/lpqP |
| Rv0409/ackA | (cc=0.4264) | info on Rv0409/ackA |
| Rv3000/- | (cc=0.4243) | info on Rv3000/- |
| Rv0418/lpqL | (cc=0.4128) | info on Rv0418/lpqL |
| Rv0938/ligD | (cc=0.4089) | info on Rv0938/ligD |
| Rv3705c/- | (cc=0.4082) | info on Rv3705c/- |
Correlation of Rv3713/cobQ2 with Rv3595c/PE_PGRS59
Normalized LFCs for Rv3713/cobQ2:
(description and provenance of datasets)
| Rv3713/cobQ2 | Rv3595c/PE_PGRS59 | |
| Fe_supp_jason_reseq | -1.07 | -0.077 |
| low_pH_jason_reseq | 0.656 | 1.084 |
| NO_jason_reseq | 0.0 | -0.173 |
| B6_jason_reseq | -0.752 | -1.38 |
| MHCII_jason_reseq | -0.663 | -0.8 |
| Isoniazid02 | -0.221 | -0.631 |
| Rifampicin4 | 0.872 | 0.441 |
| Ethambutol3 | 0.0 | 0.085 |
| Meropenem3 | 2.19 | 3.243 |
| Vancomycin16 | 0.698 | -0.037 |
| Rv2680_day32 | 0.0 | -0.347 |
| H37Rv_KO_MarP | -0.371 | -0.34 |
| hypoxia_3wks | 0.0 | -0.961 |
| hypoxia_6wks | 0.0 | -2.088 |
| glycerol | 0.0 | -0.581 |
| cholesterol | 0.0 | -0.295 |
| AJ | 0.0 | -0.126 |
| Bibs02 | 0.0 | 0.392 |
| Bibs02c | 0.0 | 0.185 |
| BL6 | 0.0 | 0.064 |
| BL6a | 0.0 | -0.57 |
| BXD01 | 0.0 | 0.699 |
| BXD010 | 0.0 | -0.368 |
| BXD011 | 0.0 | -0.81 |
| BXD03 | 0.0 | 0.035 |
| BXD04 | 0.0 | -0.084 |
| BXD05 | 0.0 | -0.992 |
| BXD06 | 0.0 | -0.638 |
| BXD07 | 0.0 | 0.071 |
| BXD08 | 0.0 | 0.035 |
| BXD09 | 0.0 | -0.859 |
| CAST | 0.0 | -0.093 |
| CCcont | 0.0 | 0.474 |
| DS01 | 0.0 | -0.806 |
| DS02 | 0.0 | -0.18 |
| DS04 | 0.0 | -0.427 |
| DS0c | 0.0 | -1.38 |
| GP01 | 0.0 | 0.388 |
| GP02 | 0.0 | 0.522 |
| GP0c | 0.0 | 0.816 |
| NOD | 0.0 | -0.251 |
| NZO | 0.0 | -0.312 |
| PWK | 0.0 | 0.173 |
| H37Rv_KO_CtpC | 0.0 | 0.467 |
| H37Rv_KO_CtpD | 1.315 | 1.197 |
| H37Rv_KO_Rv1272 | 0.0 | 0.592 |
| H37Rv_KO_SugABC | 0.0 | 0.972 |
| H37Rv_KO_MbtN | 0.0 | -0.028 |
| Trans05 | 0.0 | 1.316 |
| macrophage_unactivated | 0.0 | 1.424 |
| IL1 | 0.0 | -1.824 |
| Rapamycin | 0.0 | -1.488 |
| Tcell | 0.0 | 0.792 |
| GMCSF | 0.0 | -0.079 |
| IFNab | 0.0 | -1.723 |
| IFNg | 0.0 | -1.082 |
| IFNg_GMCSF1 | 0.0 | -0.386 |
| Rv1432_day32 | 0.0 | -0.299 |
| Rv1565c_day32 | 0.0 | 0.141 |
| secA2_input | 0.504 | -0.133 |
| delta_Rv3594 | 0.0 | -0.739 |
| delta_Rv3717 | 0.174 | -1.426 |
| delta_Rv3811 | 0.0 | -0.793 |
| delta_Rv0954 | 0.0 | -1.021 |
| PonA1 | 0.0 | -0.615 |
| EccD1_KO | -0.454 | -0.454 |
| EspI_KO | -0.394 | -0.317 |
| PE35_KO | 0.368 | -0.222 |
| PPE68_KO | -0.442 | -0.499 |
| glycerol2 | 0.0 | -0.083 |
| lignocerate | 0.0 | -0.284 |
| oleate | 0.0 | -0.359 |
| phosphatidylcholine | 0.0 | -0.528 |
| acetate | 0.0 | -0.775 |
| glucAc | 0.0 | -0.345 |
| Rv0950ko | 0.0 | 0.274 |
| Rv1096ko | 0.0 | 0.184 |
| Rv3684ko | 0.0 | 0.517 |
| delta_otsA_trehalose | 0.133 | -0.029 |