Top 10 genes with highest correlation to Rv3566A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3750c/- | (cc=0.4583) | info on Rv3750c/- |
| Rv2519/PE26 | (cc=0.4408) | info on Rv2519/PE26 |
| Rv3427c/- | (cc=0.4323) | info on Rv3427c/- |
| Rv3382c/lytB1 | (cc=0.4312) | info on Rv3382c/lytB1 |
| Rv0021c/- | (cc=0.4301) | info on Rv0021c/- |
| Rv0112/gca | (cc=0.428) | info on Rv0112/gca |
| Rv1579c/- | (cc=0.4234) | info on Rv1579c/- |
| Rv1933c/fadE18 | (cc=0.4168) | info on Rv1933c/fadE18 |
| Rv3425/PPE57 | (cc=0.4162) | info on Rv3425/PPE57 |
| Rv3796/- | (cc=0.4149) | info on Rv3796/- |
Correlation of Rv3566A/- with Rv3750c/-
Normalized LFCs for Rv3566A/-:
(description and provenance of datasets)
| Rv3566A/- | Rv3750c/- | |
| Fe_supp_jason_reseq | 0.256 | -0.723 |
| low_pH_jason_reseq | -0.935 | -0.052 |
| NO_jason_reseq | 0.263 | -0.163 |
| B6_jason_reseq | -1.356 | -1.315 |
| MHCII_jason_reseq | -0.944 | -1.782 |
| Isoniazid02 | 1.288 | 0.039 |
| Rifampicin4 | 0.812 | -0.758 |
| Ethambutol3 | 0.471 | 0.134 |
| Meropenem3 | 0.128 | -0.492 |
| Vancomycin16 | 2.014 | 0.058 |
| Rv2680_day32 | 0.0 | 0.426 |
| H37Rv_KO_MarP | 0.967 | 0.498 |
| hypoxia_3wks | 0.478 | -1.447 |
| hypoxia_6wks | -0.739 | -0.679 |
| glycerol | -0.206 | 1.233 |
| cholesterol | 1.031 | -0.765 |
| AJ | -0.57 | -0.536 |
| Bibs02 | -2.787 | 0.764 |
| Bibs02c | 1.687 | 1.075 |
| BL6 | 1.022 | 0.798 |
| BL6a | 1.848 | 1.499 |
| BXD01 | 1.021 | 1.087 |
| BXD010 | 1.033 | 1.049 |
| BXD011 | -0.2 | 0.801 |
| BXD03 | 0.93 | 0.729 |
| BXD04 | 0.94 | 0.932 |
| BXD05 | 1.419 | 1.4 |
| BXD06 | 0.418 | 1.206 |
| BXD07 | 1.069 | 1.543 |
| BXD08 | 1.728 | 1.697 |
| BXD09 | 1.734 | 0.75 |
| CAST | 2.261 | 1.148 |
| CCcont | 1.393 | 1.338 |
| DS01 | 0.652 | 0.811 |
| DS02 | 1.85 | 1.257 |
| DS04 | -0.663 | 0.032 |
| DS0c | 1.724 | 1.92 |
| GP01 | -1.505 | 1.878 |
| GP02 | -1.04 | -0.042 |
| GP0c | -1.982 | 0.865 |
| NOD | -0.112 | 0.361 |
| NZO | 1.345 | 0.685 |
| PWK | -1.469 | -0.453 |
| H37Rv_KO_CtpC | 2.155 | 1.655 |
| H37Rv_KO_CtpD | 1.858 | 0.933 |
| H37Rv_KO_Rv1272 | 1.525 | 1.322 |
| H37Rv_KO_SugABC | -1.321 | 0.409 |
| H37Rv_KO_MbtN | -0.628 | 1.622 |
| Trans05 | 1.166 | 1.553 |
| macrophage_unactivated | -2.386 | 0.413 |
| IL1 | 0.392 | -0.682 |
| Rapamycin | 0.209 | 0.095 |
| Tcell | -0.775 | -0.062 |
| GMCSF | 0.15 | 0.224 |
| IFNab | -1.061 | -0.435 |
| IFNg | -0.158 | 0.545 |
| IFNg_GMCSF1 | -0.185 | 0.936 |
| Rv1432_day32 | -0.489 | -0.563 |
| Rv1565c_day32 | 0.0 | 1.265 |
| secA2_input | 1.196 | -0.537 |
| delta_Rv3594 | -0.3 | 0.324 |
| delta_Rv3717 | -0.6 | -0.372 |
| delta_Rv3811 | 0.309 | -0.122 |
| delta_Rv0954 | -0.08 | -0.496 |
| PonA1 | -2.028 | -0.763 |
| EccD1_KO | -1.25 | -0.023 |
| EspI_KO | -2.444 | 0.294 |
| PE35_KO | -1.916 | -1.041 |
| PPE68_KO | -2.268 | -1.126 |
| glycerol2 | -0.322 | -0.261 |
| lignocerate | -1.05 | 0.226 |
| oleate | 0.014 | 0.009 |
| phosphatidylcholine | -0.766 | 0.017 |
| acetate | -0.291 | 0.219 |
| glucAc | -1.785 | 0.466 |
| Rv0950ko | 0.25 | -0.383 |
| Rv1096ko | -2.615 | -1.149 |
| Rv3684ko | 0.465 | -0.874 |
| delta_otsA_trehalose | 1.417 | 2.322 |