Top 10 genes with highest correlation to Rv3318/sdhA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3317/sdhD | (cc=0.6485) | info on Rv3317/sdhD |
| Rv3319/sdhB | (cc=0.5495) | info on Rv3319/sdhB |
| Rv2772c/- | (cc=0.5493) | info on Rv2772c/- |
| Rv3316/sdhC | (cc=0.5079) | info on Rv3316/sdhC |
| Rv2052c/- | (cc=0.4567) | info on Rv2052c/- |
| Rv0190/- | (cc=0.4544) | info on Rv0190/- |
| Rv1109c/- | (cc=0.3803) | info on Rv1109c/- |
| Rv2781c/- | (cc=0.3788) | info on Rv2781c/- |
| Rv0099/fadD10 | (cc=0.378) | info on Rv0099/fadD10 |
| Rv3828c/- | (cc=0.3758) | info on Rv3828c/- |
Correlation of Rv3318/sdhA with Rv3317/sdhD
Normalized LFCs for Rv3318/sdhA:
(description and provenance of datasets)
| Rv3318/sdhA | Rv3317/sdhD | |
| Fe_supp_jason_reseq | 0.447 | 1.448 |
| low_pH_jason_reseq | 0.231 | 2.039 |
| NO_jason_reseq | 4.744 | 3.46 |
| B6_jason_reseq | -0.229 | -0.637 |
| MHCII_jason_reseq | -0.681 | -2.064 |
| Isoniazid02 | 0.826 | 0.166 |
| Rifampicin4 | -0.29 | 0.273 |
| Ethambutol3 | -0.384 | -0.17 |
| Meropenem3 | 2.5 | 0.558 |
| Vancomycin16 | 0.326 | 0.268 |
| Rv2680_day32 | -0.68 | 0.011 |
| H37Rv_KO_MarP | -0.985 | -2.838 |
| hypoxia_3wks | 0.901 | 0.227 |
| hypoxia_6wks | 0.752 | 0.146 |
| glycerol | 2.105 | 0.23 |
| cholesterol | 0.241 | -0.987 |
| AJ | -1.334 | -2.345 |
| Bibs02 | -0.319 | -1.405 |
| Bibs02c | 0.385 | -0.497 |
| BL6 | 0.443 | -1.478 |
| BL6a | -0.04 | -0.314 |
| BXD01 | 0.051 | -0.43 |
| BXD010 | -0.828 | -0.171 |
| BXD011 | -0.026 | -1.765 |
| BXD03 | 0.249 | -0.936 |
| BXD04 | 0.968 | -0.937 |
| BXD05 | -0.557 | -2.394 |
| BXD06 | 0.529 | -0.632 |
| BXD07 | 0.054 | -0.621 |
| BXD08 | -0.365 | -1.217 |
| BXD09 | -0.117 | -1.401 |
| CAST | 0.681 | 0.646 |
| CCcont | 0.441 | -0.294 |
| DS01 | 0.352 | -0.435 |
| DS02 | -0.044 | 0.257 |
| DS04 | -0.433 | 1.023 |
| DS0c | 0.399 | 0.448 |
| GP01 | -1.513 | -2.861 |
| GP02 | -0.923 | -2.411 |
| GP0c | -0.996 | -1.941 |
| NOD | -0.799 | -0.792 |
| NZO | -1.078 | -1.959 |
| PWK | -1.344 | -0.311 |
| H37Rv_KO_CtpC | 1.16 | 1.044 |
| H37Rv_KO_CtpD | 0.635 | 0.333 |
| H37Rv_KO_Rv1272 | 0.329 | -1.487 |
| H37Rv_KO_SugABC | -0.197 | -1.762 |
| H37Rv_KO_MbtN | -0.49 | -1.563 |
| Trans05 | -0.109 | -2.897 |
| macrophage_unactivated | 0.843 | -0.139 |
| IL1 | 1.083 | 0.279 |
| Rapamycin | 1.402 | -1.132 |
| Tcell | 2.141 | 1.965 |
| GMCSF | 1.523 | 0.248 |
| IFNab | -0.305 | -2.162 |
| IFNg | 1.315 | -0.118 |
| IFNg_GMCSF1 | 0.075 | -1.203 |
| Rv1432_day32 | -1.602 | -2.821 |
| Rv1565c_day32 | -0.738 | -3.609 |
| secA2_input | -0.249 | 1.295 |
| delta_Rv3594 | 0.583 | -0.639 |
| delta_Rv3717 | -0.844 | -2.292 |
| delta_Rv3811 | 0.049 | -1.854 |
| delta_Rv0954 | 0.854 | 1.539 |
| PonA1 | 1.266 | 1.304 |
| EccD1_KO | -0.122 | -0.779 |
| EspI_KO | -0.505 | -0.65 |
| PE35_KO | 0.875 | -0.642 |
| PPE68_KO | 0.342 | -0.729 |
| glycerol2 | -0.497 | -1.799 |
| lignocerate | -0.647 | -1.136 |
| oleate | -0.469 | -1.974 |
| phosphatidylcholine | 0.025 | -0.566 |
| acetate | 0.422 | -0.028 |
| glucAc | -0.059 | -0.327 |
| Rv0950ko | -0.296 | 0.434 |
| Rv1096ko | 0.383 | 0.85 |
| Rv3684ko | -1.277 | 0.029 |
| delta_otsA_trehalose | -0.306 | -0.222 |