Top 10 genes with highest correlation to Rv3297/nei:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2340c/PE_PGRS39 | (cc=0.5435) | info on Rv2340c/PE_PGRS39 |
| Rv2326c/- | (cc=0.5186) | info on Rv2326c/- |
| Rv1243c/PE_PGRS23 | (cc=0.4979) | info on Rv1243c/PE_PGRS23 |
| Rv1066/- | (cc=0.4936) | info on Rv1066/- |
| Rv2490c/PE_PGRS43 | (cc=0.4751) | info on Rv2490c/PE_PGRS43 |
| Rv0648/- | (cc=0.4718) | info on Rv0648/- |
| Rv2974c/- | (cc=0.4703) | info on Rv2974c/- |
| Rv0614/- | (cc=0.4674) | info on Rv0614/- |
| Rv2402/- | (cc=0.4649) | info on Rv2402/- |
| Rv2646/- | (cc=0.4589) | info on Rv2646/- |
Correlation of Rv3297/nei with Rv2340c/PE_PGRS39
Normalized LFCs for Rv3297/nei:
(description and provenance of datasets)
| Rv3297/nei | Rv2340c/PE_PGRS39 | |
| Fe_supp_jason_reseq | -0.224 | -0.063 |
| low_pH_jason_reseq | -0.04 | -0.452 |
| NO_jason_reseq | -0.305 | -0.417 |
| B6_jason_reseq | -0.009 | 0.657 |
| MHCII_jason_reseq | 0.031 | 0.619 |
| Isoniazid02 | 0.16 | 1.157 |
| Rifampicin4 | 1.248 | 0.485 |
| Ethambutol3 | 1.927 | 1.549 |
| Meropenem3 | 0.707 | 0.728 |
| Vancomycin16 | 0.661 | 0.061 |
| Rv2680_day32 | 0.764 | -0.465 |
| H37Rv_KO_MarP | 0.178 | -0.302 |
| hypoxia_3wks | -0.566 | -0.774 |
| hypoxia_6wks | -0.319 | -0.666 |
| glycerol | 0.487 | 0.65 |
| cholesterol | 0.424 | 0.315 |
| AJ | -0.072 | 0.565 |
| Bibs02 | 0.787 | 0.984 |
| Bibs02c | -0.361 | 0.679 |
| BL6 | 0.25 | -0.16 |
| BL6a | -0.452 | 0.014 |
| BXD01 | -0.148 | -0.58 |
| BXD010 | -0.403 | -0.687 |
| BXD011 | -0.464 | -0.737 |
| BXD03 | 0.007 | -0.566 |
| BXD04 | -1.029 | 0.035 |
| BXD05 | 0.303 | -0.068 |
| BXD06 | -0.486 | -0.939 |
| BXD07 | -0.425 | -0.624 |
| BXD08 | -0.67 | -0.277 |
| BXD09 | -0.553 | -0.626 |
| CAST | 0.103 | 0.794 |
| CCcont | -0.031 | -0.278 |
| DS01 | 0.867 | 0.956 |
| DS02 | 1.065 | 0.993 |
| DS04 | 1.106 | 0.45 |
| DS0c | 1.398 | 0.94 |
| GP01 | -0.01 | -0.24 |
| GP02 | 1.55 | 0.643 |
| GP0c | -0.531 | -0.111 |
| NOD | 0.542 | -0.218 |
| NZO | -0.094 | 0.48 |
| PWK | -0.01 | 0.672 |
| H37Rv_KO_CtpC | -0.726 | -0.891 |
| H37Rv_KO_CtpD | -0.006 | -0.009 |
| H37Rv_KO_Rv1272 | -1.157 | 0.232 |
| H37Rv_KO_SugABC | -0.015 | 0.386 |
| H37Rv_KO_MbtN | 0.249 | 0.239 |
| Trans05 | 0.423 | 0.28 |
| macrophage_unactivated | -0.758 | -1.004 |
| IL1 | -0.187 | -0.736 |
| Rapamycin | -0.279 | -0.62 |
| Tcell | -0.714 | -0.978 |
| GMCSF | 0.092 | -0.747 |
| IFNab | -0.333 | -0.429 |
| IFNg | -0.168 | -0.526 |
| IFNg_GMCSF1 | 1.128 | -0.154 |
| Rv1432_day32 | 0.057 | 0.352 |
| Rv1565c_day32 | -1.829 | 0.051 |
| secA2_input | 0.676 | 0.512 |
| delta_Rv3594 | 0.061 | -0.207 |
| delta_Rv3717 | -0.273 | -0.44 |
| delta_Rv3811 | -0.174 | -0.007 |
| delta_Rv0954 | -0.063 | 0.172 |
| PonA1 | -0.328 | -0.128 |
| EccD1_KO | -0.322 | 0.697 |
| EspI_KO | -0.453 | 0.211 |
| PE35_KO | 0.108 | 0.117 |
| PPE68_KO | 0.749 | 0.038 |
| glycerol2 | -0.338 | -0.041 |
| lignocerate | 0.412 | 0.516 |
| oleate | -0.315 | 0.0 |
| phosphatidylcholine | 0.15 | 0.494 |
| acetate | 0.874 | 0.116 |
| glucAc | 0.642 | 0.086 |
| Rv0950ko | -0.371 | 0.555 |
| Rv1096ko | 0.175 | -0.537 |
| Rv3684ko | -0.131 | -0.442 |
| delta_otsA_trehalose | -1.502 | -0.722 |