Top 10 genes with highest correlation to Rv3208/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0955/- | (cc=0.6447) | info on Rv0955/- |
| Rv0637/hadC | (cc=0.6115) | info on Rv0637/hadC |
| Rv0489/gpm1 | (cc=0.6022) | info on Rv0489/gpm1 |
| Rv3489/- | (cc=0.5782) | info on Rv3489/- |
| Rv2221c/glnE | (cc=0.5758) | info on Rv2221c/glnE |
| Rv2678c/hemE | (cc=0.5631) | info on Rv2678c/hemE |
| Rv3918c/parA | (cc=0.5424) | info on Rv3918c/parA |
| Rv3753c/- | (cc=0.5422) | info on Rv3753c/- |
| Rv1565c/- | (cc=0.5311) | info on Rv1565c/- |
| Rv2553c/- | (cc=0.5213) | info on Rv2553c/- |
Correlation of Rv3208/- with Rv0955/-
Normalized LFCs for Rv3208/-:
(description and provenance of datasets)
| Rv3208/- | Rv0955/- | |
| Fe_supp_jason_reseq | 4.191 | 1.837 |
| low_pH_jason_reseq | 0.0 | -1.021 |
| NO_jason_reseq | 0.0 | -0.717 |
| B6_jason_reseq | 0.0 | -1.704 |
| MHCII_jason_reseq | 0.0 | -1.244 |
| Isoniazid02 | 0.0 | -0.323 |
| Rifampicin4 | 0.0 | -1.313 |
| Ethambutol3 | 0.0 | 0.34 |
| Meropenem3 | 0.0 | -0.417 |
| Vancomycin16 | 0.0 | -1.287 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -1.705 | -3.71 |
| hypoxia_3wks | -0.55 | -0.734 |
| hypoxia_6wks | -0.288 | -0.384 |
| glycerol | 0.0 | -0.919 |
| cholesterol | 0.0 | 0.0 |
| AJ | 0.0 | -0.845 |
| Bibs02 | 0.0 | -0.115 |
| Bibs02c | 0.0 | 0.753 |
| BL6 | 0.768 | -0.254 |
| BL6a | 0.0 | 0.118 |
| BXD01 | 0.0 | -0.475 |
| BXD010 | 0.352 | 0.569 |
| BXD011 | 0.35 | -0.579 |
| BXD03 | 0.0 | -0.177 |
| BXD04 | 0.0 | -0.251 |
| BXD05 | 0.135 | 0.08 |
| BXD06 | 0.0 | -0.084 |
| BXD07 | 0.0 | 0.499 |
| BXD08 | 0.0 | -0.084 |
| BXD09 | 0.0 | 0.0 |
| CAST | 0.0 | 1.023 |
| CCcont | 1.43 | 2.378 |
| DS01 | 0.0 | 0.274 |
| DS02 | 0.0 | -0.61 |
| DS04 | 0.682 | 0.781 |
| DS0c | 0.0 | -0.137 |
| GP01 | 0.0 | -0.548 |
| GP02 | 0.0 | -0.462 |
| GP0c | 0.357 | 0.0 |
| NOD | 0.0 | -0.142 |
| NZO | 0.0 | -0.126 |
| PWK | 0.0 | -0.257 |
| H37Rv_KO_CtpC | 0.0 | 2.378 |
| H37Rv_KO_CtpD | 0.0 | 0.28 |
| H37Rv_KO_Rv1272 | 0.141 | -0.395 |
| H37Rv_KO_SugABC | 0.348 | -0.062 |
| H37Rv_KO_MbtN | 0.196 | 1.0 |
| Trans05 | 0.131 | -0.366 |
| macrophage_unactivated | 0.398 | -0.17 |
| IL1 | 0.374 | -1.077 |
| Rapamycin | 1.068 | -0.166 |
| Tcell | 0.0 | 0.336 |
| GMCSF | 0.333 | 0.272 |
| IFNab | 0.729 | 0.157 |
| IFNg | 0.93 | -0.617 |
| IFNg_GMCSF1 | 0.396 | 0.625 |
| Rv1432_day32 | 0.0 | 0.621 |
| Rv1565c_day32 | 0.0 | -0.766 |
| secA2_input | -1.368 | -0.225 |
| delta_Rv3594 | 1.487 | 1.52 |
| delta_Rv3717 | 1.223 | 1.888 |
| delta_Rv3811 | -0.171 | 0.973 |
| delta_Rv0954 | -0.149 | -3.467 |
| PonA1 | -0.204 | -2.282 |
| EccD1_KO | -1.204 | -1.194 |
| EspI_KO | 0.0 | -0.676 |
| PE35_KO | -2.981 | -2.71 |
| PPE68_KO | -2.742 | -2.236 |
| glycerol2 | -0.82 | -1.625 |
| lignocerate | -0.712 | -2.025 |
| oleate | -0.829 | -1.472 |
| phosphatidylcholine | -0.819 | -1.947 |
| acetate | -0.973 | -2.151 |
| glucAc | -0.605 | -2.324 |
| Rv0950ko | 0.311 | -0.416 |
| Rv1096ko | -0.513 | -1.707 |
| Rv3684ko | 0.17 | 0.789 |
| delta_otsA_trehalose | 0.0 | 0.202 |