Top 10 genes with highest correlation to Rv3198c/uvrD2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3388/PE_PGRS52 | (cc=0.4981) | info on Rv3388/PE_PGRS52 |
| Rv3512/PE_PGRS56 | (cc=0.4684) | info on Rv3512/PE_PGRS56 |
| Rv3428c/- | (cc=0.4532) | info on Rv3428c/- |
| Rv0213c/- | (cc=0.4522) | info on Rv0213c/- |
| Rv0515/- | (cc=0.4202) | info on Rv0515/- |
| Rv0787/- | (cc=0.4037) | info on Rv0787/- |
| Rv0814c/sseC2 | (cc=0.4002) | info on Rv0814c/sseC2 |
| Rv0260c/- | (cc=0.3973) | info on Rv0260c/- |
| Rv0963c/- | (cc=0.3904) | info on Rv0963c/- |
| Rv0872c/PE_PGRS15 | (cc=0.3889) | info on Rv0872c/PE_PGRS15 |
Correlation of Rv3198c/uvrD2 with Rv3388/PE_PGRS52
Normalized LFCs for Rv3198c/uvrD2:
(description and provenance of datasets)
| Rv3198c/uvrD2 | Rv3388/PE_PGRS52 | |
| Fe_supp_jason_reseq | -0.096 | 0.06 |
| low_pH_jason_reseq | -0.323 | -1.486 |
| NO_jason_reseq | -0.331 | -0.433 |
| B6_jason_reseq | 0.604 | 0.124 |
| MHCII_jason_reseq | 0.192 | 1.471 |
| Isoniazid02 | -0.135 | -0.784 |
| Rifampicin4 | -0.43 | 1.137 |
| Ethambutol3 | -0.113 | 0.368 |
| Meropenem3 | 0.628 | -0.678 |
| Vancomycin16 | 0.157 | -0.31 |
| Rv2680_day32 | -0.312 | -0.095 |
| H37Rv_KO_MarP | -0.185 | -0.347 |
| hypoxia_3wks | -0.387 | -0.132 |
| hypoxia_6wks | -0.497 | -1.155 |
| glycerol | 0.282 | 1.021 |
| cholesterol | 0.518 | 0.034 |
| AJ | 0.899 | 1.627 |
| Bibs02 | 0.709 | 0.844 |
| Bibs02c | 1.099 | 0.77 |
| BL6 | 0.053 | -0.768 |
| BL6a | 0.552 | 0.09 |
| BXD01 | 0.081 | -0.422 |
| BXD010 | 0.054 | -0.375 |
| BXD011 | 0.475 | 0.03 |
| BXD03 | 0.263 | -0.276 |
| BXD04 | 0.15 | -0.568 |
| BXD05 | 0.237 | -0.031 |
| BXD06 | 0.135 | -1.064 |
| BXD07 | -0.446 | -0.207 |
| BXD08 | 0.592 | -0.817 |
| BXD09 | 0.322 | -0.805 |
| CAST | 0.752 | 0.205 |
| CCcont | 1.098 | -0.305 |
| DS01 | 0.373 | -0.055 |
| DS02 | 0.711 | -0.158 |
| DS04 | 0.968 | 0.617 |
| DS0c | 0.22 | -0.845 |
| GP01 | -0.577 | -0.89 |
| GP02 | 0.629 | 0.142 |
| GP0c | -0.346 | -0.23 |
| NOD | 0.552 | 1.988 |
| NZO | 1.402 | 0.493 |
| PWK | 0.641 | 1.047 |
| H37Rv_KO_CtpC | -0.345 | -0.038 |
| H37Rv_KO_CtpD | 1.436 | 0.81 |
| H37Rv_KO_Rv1272 | 0.795 | 2.051 |
| H37Rv_KO_SugABC | 1.151 | 1.024 |
| H37Rv_KO_MbtN | 0.105 | 0.273 |
| Trans05 | 0.525 | -0.698 |
| macrophage_unactivated | 0.186 | -0.625 |
| IL1 | 0.0 | -0.715 |
| Rapamycin | 0.522 | -1.163 |
| Tcell | 0.0 | -1.391 |
| GMCSF | 0.449 | 0.792 |
| IFNab | 0.0 | -2.116 |
| IFNg | 0.158 | -0.762 |
| IFNg_GMCSF1 | -0.192 | 0.116 |
| Rv1432_day32 | 0.541 | 0.585 |
| Rv1565c_day32 | 0.355 | -0.599 |
| secA2_input | 0.0 | 0.238 |
| delta_Rv3594 | -0.379 | -0.623 |
| delta_Rv3717 | -0.238 | -0.384 |
| delta_Rv3811 | 0.214 | -0.895 |
| delta_Rv0954 | -0.963 | -1.614 |
| PonA1 | -0.03 | -0.886 |
| EccD1_KO | 0.293 | -0.089 |
| EspI_KO | -0.088 | -0.157 |
| PE35_KO | -0.277 | -0.289 |
| PPE68_KO | 0.192 | -0.131 |
| glycerol2 | 0.611 | 0.283 |
| lignocerate | 1.112 | 0.392 |
| oleate | -0.549 | -0.105 |
| phosphatidylcholine | 0.611 | 0.193 |
| acetate | 0.618 | 0.0 |
| glucAc | 0.944 | 1.306 |
| Rv0950ko | -0.247 | -0.136 |
| Rv1096ko | -0.513 | -0.045 |
| Rv3684ko | 0.95 | 0.714 |
| delta_otsA_trehalose | 1.056 | 0.378 |