Top 10 genes with highest correlation to Rv3190A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1071c/echA9 | (cc=0.5051) | info on Rv1071c/echA9 |
| Rv0963c/- | (cc=0.5016) | info on Rv0963c/- |
| Rv0559c/- | (cc=0.4858) | info on Rv0559c/- |
| Rv0348/- | (cc=0.482) | info on Rv0348/- |
| Rv2060/- | (cc=0.4737) | info on Rv2060/- |
| Rv0842/- | (cc=0.4722) | info on Rv0842/- |
| Rv1863c/- | (cc=0.467) | info on Rv1863c/- |
| Rv1141c/echA11 | (cc=0.4649) | info on Rv1141c/echA11 |
| Rv1074c/fadA3 | (cc=0.4587) | info on Rv1074c/fadA3 |
| Rv2008c/- | (cc=0.4566) | info on Rv2008c/- |
Correlation of Rv3190A/- with Rv1071c/echA9
Normalized LFCs for Rv3190A/-:
(description and provenance of datasets)
| Rv3190A/- | Rv1071c/echA9 | |
| Fe_supp_jason_reseq | -0.586 | -2.134 |
| low_pH_jason_reseq | -2.028 | -6.0 |
| NO_jason_reseq | 0.625 | -0.714 |
| B6_jason_reseq | -1.103 | -1.643 |
| MHCII_jason_reseq | -0.835 | -0.403 |
| Isoniazid02 | 0.578 | -0.38 |
| Rifampicin4 | -0.352 | 1.625 |
| Ethambutol3 | 1.811 | 2.909 |
| Meropenem3 | 1.127 | -0.565 |
| Vancomycin16 | 0.427 | 0.65 |
| Rv2680_day32 | -0.28 | -1.463 |
| H37Rv_KO_MarP | 0.119 | 0.131 |
| hypoxia_3wks | -0.271 | -2.245 |
| hypoxia_6wks | 0.305 | -1.779 |
| glycerol | 0.039 | -0.341 |
| cholesterol | -1.12 | -1.471 |
| AJ | 0.734 | -1.143 |
| Bibs02 | -0.029 | -0.359 |
| Bibs02c | -0.076 | -0.361 |
| BL6 | 0.34 | -0.587 |
| BL6a | 0.616 | -1.323 |
| BXD01 | 0.217 | -1.426 |
| BXD010 | 1.089 | -1.162 |
| BXD011 | 0.536 | -1.515 |
| BXD03 | -0.281 | -0.581 |
| BXD04 | -0.245 | -0.728 |
| BXD05 | 0.188 | -1.541 |
| BXD06 | 0.139 | -1.418 |
| BXD07 | 0.074 | -1.218 |
| BXD08 | 0.539 | -1.412 |
| BXD09 | 0.855 | -1.427 |
| CAST | 0.674 | -0.267 |
| CCcont | 0.667 | -0.661 |
| DS01 | -0.144 | 0.95 |
| DS02 | 0.551 | 1.531 |
| DS04 | -1.189 | 0.034 |
| DS0c | 0.181 | 0.484 |
| GP01 | 0.519 | -1.89 |
| GP02 | -0.768 | -2.563 |
| GP0c | 0.247 | -2.376 |
| NOD | 1.601 | -0.093 |
| NZO | -0.088 | -0.936 |
| PWK | 0.352 | -0.365 |
| H37Rv_KO_CtpC | 1.212 | 0.685 |
| H37Rv_KO_CtpD | 0.503 | -1.157 |
| H37Rv_KO_Rv1272 | 0.0 | -1.269 |
| H37Rv_KO_SugABC | 0.26 | -0.94 |
| H37Rv_KO_MbtN | 0.07 | -1.364 |
| Trans05 | -0.685 | -1.065 |
| macrophage_unactivated | 0.335 | -1.231 |
| IL1 | 0.593 | -1.658 |
| Rapamycin | -0.35 | -1.547 |
| Tcell | -0.042 | -0.674 |
| GMCSF | 0.438 | -0.771 |
| IFNab | -0.995 | -1.69 |
| IFNg | 0.171 | -2.996 |
| IFNg_GMCSF1 | -0.779 | -2.718 |
| Rv1432_day32 | -0.05 | -1.287 |
| Rv1565c_day32 | -0.477 | -0.403 |
| secA2_input | -0.833 | 0.167 |
| delta_Rv3594 | 0.679 | 0.653 |
| delta_Rv3717 | 0.949 | -0.289 |
| delta_Rv3811 | 0.943 | 0.296 |
| delta_Rv0954 | 0.136 | 0.845 |
| PonA1 | 0.201 | 0.205 |
| EccD1_KO | 1.02 | 0.398 |
| EspI_KO | 0.884 | 0.73 |
| PE35_KO | 1.663 | 0.181 |
| PPE68_KO | 1.709 | -0.138 |
| glycerol2 | 1.087 | 0.738 |
| lignocerate | 1.478 | 0.588 |
| oleate | 0.194 | 1.09 |
| phosphatidylcholine | 1.106 | 0.714 |
| acetate | 1.122 | 0.032 |
| glucAc | 1.216 | -0.28 |
| Rv0950ko | 1.282 | -0.449 |
| Rv1096ko | 0.498 | 0.582 |
| Rv3684ko | -0.111 | -0.829 |
| delta_otsA_trehalose | 1.294 | -0.355 |