Top 10 genes with highest correlation to Rv2459/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2408/PE24 | (cc=0.5404) | info on Rv2408/PE24 |
| Rv1981c/nrdF1 | (cc=0.5148) | info on Rv1981c/nrdF1 |
| Rv2634c/PE_PGRS46 | (cc=0.4949) | info on Rv2634c/PE_PGRS46 |
| Rv1744c/- | (cc=0.4801) | info on Rv1744c/- |
| Rv3435c/- | (cc=0.4758) | info on Rv3435c/- |
| Rv3194c/- | (cc=0.4624) | info on Rv3194c/- |
| Rv1435c/- | (cc=0.4619) | info on Rv1435c/- |
| Rv2789c/fadE21 | (cc=0.451) | info on Rv2789c/fadE21 |
| Rv3365c/- | (cc=0.4496) | info on Rv3365c/- |
| Rv2308/- | (cc=0.443) | info on Rv2308/- |
Correlation of Rv2459/- with Rv2408/PE24
Normalized LFCs for Rv2459/-:
(description and provenance of datasets)
| Rv2459/- | Rv2408/PE24 | |
| Fe_supp_jason_reseq | 0.384 | 0.385 |
| low_pH_jason_reseq | -1.335 | -1.752 |
| NO_jason_reseq | -0.273 | -1.016 |
| B6_jason_reseq | -0.685 | -0.122 |
| MHCII_jason_reseq | -0.074 | 0.741 |
| Isoniazid02 | -0.631 | -0.696 |
| Rifampicin4 | 0.181 | -0.198 |
| Ethambutol3 | -0.73 | -0.822 |
| Meropenem3 | -0.042 | -0.979 |
| Vancomycin16 | -0.997 | -0.462 |
| Rv2680_day32 | -0.285 | -0.037 |
| H37Rv_KO_MarP | -0.229 | 0.413 |
| hypoxia_3wks | -0.219 | -0.195 |
| hypoxia_6wks | -0.764 | -0.587 |
| glycerol | -0.149 | 0.051 |
| cholesterol | 0.242 | 0.357 |
| AJ | 0.012 | -0.113 |
| Bibs02 | 0.094 | 0.062 |
| Bibs02c | 0.458 | -0.065 |
| BL6 | 0.399 | 0.094 |
| BL6a | 0.494 | 0.026 |
| BXD01 | -0.628 | -0.1 |
| BXD010 | 0.255 | -0.147 |
| BXD011 | 0.094 | -0.366 |
| BXD03 | -0.02 | -0.228 |
| BXD04 | -0.297 | 0.161 |
| BXD05 | 0.135 | 0.155 |
| BXD06 | -0.127 | -0.128 |
| BXD07 | 0.077 | -0.249 |
| BXD08 | -0.169 | 0.314 |
| BXD09 | -0.013 | -0.26 |
| CAST | -0.526 | -0.437 |
| CCcont | -0.066 | 0.206 |
| DS01 | 0.142 | -0.214 |
| DS02 | 0.265 | 0.038 |
| DS04 | 0.386 | -0.042 |
| DS0c | 0.902 | -0.526 |
| GP01 | 0.161 | 0.382 |
| GP02 | 1.16 | 0.773 |
| GP0c | -0.137 | -0.26 |
| NOD | 1.206 | 0.086 |
| NZO | 0.366 | -0.062 |
| PWK | 0.153 | -0.476 |
| H37Rv_KO_CtpC | 0.453 | 0.035 |
| H37Rv_KO_CtpD | 0.036 | 0.61 |
| H37Rv_KO_Rv1272 | 0.54 | 0.404 |
| H37Rv_KO_SugABC | -0.802 | -1.885 |
| H37Rv_KO_MbtN | -0.02 | -0.428 |
| Trans05 | 0.383 | -0.041 |
| macrophage_unactivated | 0.243 | -0.193 |
| IL1 | 0.362 | 0.475 |
| Rapamycin | 0.018 | 0.565 |
| Tcell | -0.499 | -0.088 |
| GMCSF | 0.079 | -0.539 |
| IFNab | 0.145 | -0.254 |
| IFNg | 0.802 | 0.158 |
| IFNg_GMCSF1 | 0.622 | -0.393 |
| Rv1432_day32 | 0.609 | 1.288 |
| Rv1565c_day32 | -1.205 | 0.063 |
| secA2_input | -0.11 | 0.393 |
| delta_Rv3594 | -0.034 | -0.021 |
| delta_Rv3717 | -0.729 | -0.638 |
| delta_Rv3811 | -0.042 | -0.107 |
| delta_Rv0954 | 0.322 | 0.245 |
| PonA1 | 0.309 | -0.074 |
| EccD1_KO | 0.408 | 1.125 |
| EspI_KO | 0.308 | 0.819 |
| PE35_KO | 0.225 | 1.286 |
| PPE68_KO | -0.074 | 0.851 |
| glycerol2 | 0.761 | 0.8 |
| lignocerate | 0.587 | 1.162 |
| oleate | 0.248 | 0.53 |
| phosphatidylcholine | 0.612 | 0.866 |
| acetate | 0.973 | 0.131 |
| glucAc | 0.579 | 0.503 |
| Rv0950ko | -0.157 | 0.449 |
| Rv1096ko | -0.187 | -0.253 |
| Rv3684ko | -0.698 | -0.825 |
| delta_otsA_trehalose | 0.286 | 0.527 |