Top 10 genes with highest correlation to Rv2404c/lepA:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0056/rplI | (cc=0.6221) | info on Rv0056/rplI |
| Rv1957/- | (cc=0.6113) | info on Rv1957/- |
| Rv2609c/- | (cc=0.5599) | info on Rv2609c/- |
| Rv1112/- | (cc=0.5434) | info on Rv1112/- |
| Rv0813c/- | (cc=0.5343) | info on Rv0813c/- |
| Rv2733c/- | (cc=0.5221) | info on Rv2733c/- |
| Rv0806c/cpsY | (cc=0.5213) | info on Rv0806c/cpsY |
| Rv2583c/relA | (cc=0.5148) | info on Rv2583c/relA |
| Rv2966c/- | (cc=0.5135) | info on Rv2966c/- |
| Rv1019/- | (cc=0.5022) | info on Rv1019/- |
Correlation of Rv2404c/lepA with Rv0056/rplI
Normalized LFCs for Rv2404c/lepA:
(description and provenance of datasets)
| Rv2404c/lepA | Rv0056/rplI | |
| Fe_supp_jason_reseq | 0.598 | 1.228 |
| low_pH_jason_reseq | -1.467 | -0.179 |
| NO_jason_reseq | 2.108 | -0.914 |
| B6_jason_reseq | 0.881 | -0.538 |
| MHCII_jason_reseq | -0.098 | 0.355 |
| Isoniazid02 | 5.905 | 2.183 |
| Rifampicin4 | 1.597 | 1.695 |
| Ethambutol3 | 1.79 | -0.85 |
| Meropenem3 | 0.264 | -1.842 |
| Vancomycin16 | 0.846 | 0.172 |
| Rv2680_day32 | -0.613 | 0.0 |
| H37Rv_KO_MarP | 1.555 | 1.369 |
| hypoxia_3wks | -3.274 | -1.798 |
| hypoxia_6wks | -3.802 | -1.148 |
| glycerol | 1.044 | 0.484 |
| cholesterol | -0.171 | -0.663 |
| AJ | -0.41 | -0.724 |
| Bibs02 | -1.46 | -0.062 |
| Bibs02c | -0.94 | -2.474 |
| BL6 | -1.237 | -0.949 |
| BL6a | 0.098 | -1.013 |
| BXD01 | -1.128 | -1.411 |
| BXD010 | 0.312 | -1.27 |
| BXD011 | 0.269 | 0.199 |
| BXD03 | 0.192 | 0.36 |
| BXD04 | -0.987 | -0.777 |
| BXD05 | 0.654 | -1.223 |
| BXD06 | 1.065 | 0.129 |
| BXD07 | 0.068 | -0.432 |
| BXD08 | 0.04 | -0.192 |
| BXD09 | -0.265 | -0.971 |
| CAST | -1.146 | -0.616 |
| CCcont | 0.0 | 1.082 |
| DS01 | -1.461 | -2.146 |
| DS02 | -2.658 | -2.571 |
| DS04 | -0.698 | -1.218 |
| DS0c | -1.422 | -1.97 |
| GP01 | -0.384 | -1.167 |
| GP02 | -0.867 | -0.984 |
| GP0c | -0.506 | -1.537 |
| NOD | -0.023 | -0.701 |
| NZO | -0.928 | -2.16 |
| PWK | -1.324 | -2.124 |
| H37Rv_KO_CtpC | -1.832 | -1.611 |
| H37Rv_KO_CtpD | -0.957 | -1.372 |
| H37Rv_KO_Rv1272 | -0.3 | 2.007 |
| H37Rv_KO_SugABC | -0.073 | 2.177 |
| H37Rv_KO_MbtN | 0.832 | 0.402 |
| Trans05 | -1.161 | -0.532 |
| macrophage_unactivated | 0.451 | 0.0 |
| IL1 | 0.249 | -0.546 |
| Rapamycin | 0.319 | 0.0 |
| Tcell | 0.068 | 0.186 |
| GMCSF | 0.816 | -1.7 |
| IFNab | -0.408 | -0.363 |
| IFNg | 0.224 | -0.673 |
| IFNg_GMCSF1 | 0.327 | -0.377 |
| Rv1432_day32 | 0.824 | 0.0 |
| Rv1565c_day32 | -2.443 | -0.7 |
| secA2_input | -0.542 | 2.677 |
| delta_Rv3594 | 3.552 | 2.509 |
| delta_Rv3717 | 4.823 | 2.718 |
| delta_Rv3811 | 2.528 | 1.782 |
| delta_Rv0954 | 3.693 | 2.638 |
| PonA1 | 0.0 | 0.352 |
| EccD1_KO | 0.056 | -0.135 |
| EspI_KO | 0.816 | -1.127 |
| PE35_KO | 0.298 | -1.152 |
| PPE68_KO | 0.915 | -0.934 |
| glycerol2 | -0.094 | 0.552 |
| lignocerate | -1.316 | -1.559 |
| oleate | -0.703 | -1.086 |
| phosphatidylcholine | -1.192 | -2.105 |
| acetate | -0.111 | -1.194 |
| glucAc | -0.084 | -0.695 |
| Rv0950ko | 0.651 | 0.072 |
| Rv1096ko | -0.19 | -1.583 |
| Rv3684ko | 1.002 | -0.246 |
| delta_otsA_trehalose | -0.866 | 1.163 |