Top 10 genes with highest correlation to Rv2396/PE_PGRS41:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3469c/mhpE | (cc=0.5397) | info on Rv3469c/mhpE |
| Rv0278c/PE_PGRS3 | (cc=0.5232) | info on Rv0278c/PE_PGRS3 |
| Rv1923/lipD | (cc=0.5232) | info on Rv1923/lipD |
| Rv1117/- | (cc=0.5174) | info on Rv1117/- |
| Rv3065/mmr | (cc=0.5145) | info on Rv3065/mmr |
| Rv1087A/- | (cc=0.5119) | info on Rv1087A/- |
| Rv0488/- | (cc=0.5095) | info on Rv0488/- |
| Rv3018c/PPE46 | (cc=0.4982) | info on Rv3018c/PPE46 |
| Rv1676/- | (cc=0.4964) | info on Rv1676/- |
| Rv1087/PE_PGRS21 | (cc=0.4929) | info on Rv1087/PE_PGRS21 |
Correlation of Rv2396/PE_PGRS41 with Rv3469c/mhpE
Normalized LFCs for Rv2396/PE_PGRS41:
(description and provenance of datasets)
| Rv2396/PE_PGRS41 | Rv3469c/mhpE | |
| Fe_supp_jason_reseq | 0.778 | 0.638 |
| low_pH_jason_reseq | -0.304 | 0.147 |
| NO_jason_reseq | -0.242 | 0.475 |
| B6_jason_reseq | 0.383 | -0.681 |
| MHCII_jason_reseq | 1.08 | -0.486 |
| Isoniazid02 | 0.019 | -0.239 |
| Rifampicin4 | 0.06 | 0.317 |
| Ethambutol3 | -0.022 | -0.277 |
| Meropenem3 | -0.331 | 0.401 |
| Vancomycin16 | -0.109 | 0.443 |
| Rv2680_day32 | -0.576 | 0.177 |
| H37Rv_KO_MarP | -0.045 | 0.412 |
| hypoxia_3wks | -0.801 | 0.183 |
| hypoxia_6wks | -0.432 | -0.647 |
| glycerol | 0.489 | 0.146 |
| cholesterol | -0.292 | 0.01 |
| AJ | 0.576 | -0.459 |
| Bibs02 | 0.442 | -0.518 |
| Bibs02c | 1.161 | 0.267 |
| BL6 | 0.0 | -0.159 |
| BL6a | 0.264 | 0.253 |
| BXD01 | -0.145 | 0.122 |
| BXD010 | -0.214 | 0.029 |
| BXD011 | -0.021 | -0.412 |
| BXD03 | 0.214 | -0.745 |
| BXD04 | 0.335 | 0.29 |
| BXD05 | 0.497 | -0.279 |
| BXD06 | 0.079 | -0.487 |
| BXD07 | -0.18 | -0.365 |
| BXD08 | 0.309 | 0.068 |
| BXD09 | 0.072 | -0.357 |
| CAST | -0.44 | 0.582 |
| CCcont | 0.122 | -0.117 |
| DS01 | -0.029 | 0.394 |
| DS02 | 0.498 | -0.296 |
| DS04 | 0.031 | 0.707 |
| DS0c | 0.497 | 0.66 |
| GP01 | 0.028 | 0.492 |
| GP02 | 1.743 | 1.149 |
| GP0c | 0.178 | 0.305 |
| NOD | 0.234 | -0.444 |
| NZO | -0.231 | -0.75 |
| PWK | -0.04 | -0.354 |
| H37Rv_KO_CtpC | 0.641 | 0.372 |
| H37Rv_KO_CtpD | 1.276 | 0.626 |
| H37Rv_KO_Rv1272 | 1.107 | 0.406 |
| H37Rv_KO_SugABC | 0.494 | -1.316 |
| H37Rv_KO_MbtN | 0.697 | -0.636 |
| Trans05 | 0.96 | 1.122 |
| macrophage_unactivated | -1.316 | -0.663 |
| IL1 | -0.409 | -1.94 |
| Rapamycin | -0.669 | -0.961 |
| Tcell | -0.655 | -0.639 |
| GMCSF | 0.135 | -0.481 |
| IFNab | -0.726 | -1.379 |
| IFNg | -0.839 | -1.451 |
| IFNg_GMCSF1 | 0.355 | -0.277 |
| Rv1432_day32 | 0.149 | 0.918 |
| Rv1565c_day32 | 0.118 | -0.704 |
| secA2_input | -0.031 | -0.066 |
| delta_Rv3594 | 0.45 | 0.61 |
| delta_Rv3717 | -0.176 | -0.696 |
| delta_Rv3811 | -0.113 | -0.397 |
| delta_Rv0954 | 0.129 | 0.129 |
| PonA1 | 0.214 | -0.416 |
| EccD1_KO | 0.595 | 0.625 |
| EspI_KO | 0.374 | 0.339 |
| PE35_KO | 0.44 | 0.394 |
| PPE68_KO | 0.688 | 0.634 |
| glycerol2 | 1.361 | 1.254 |
| lignocerate | 1.61 | 1.344 |
| oleate | 0.552 | 1.063 |
| phosphatidylcholine | 1.448 | 1.16 |
| acetate | 0.959 | 0.485 |
| glucAc | 1.051 | 0.463 |
| Rv0950ko | -0.015 | 0.021 |
| Rv1096ko | -0.66 | -0.169 |
| Rv3684ko | -0.108 | -0.138 |
| delta_otsA_trehalose | -1.153 | -0.244 |