Top 10 genes with highest correlation to Rv2331A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0379/secE2 | (cc=0.5284) | info on Rv0379/secE2 |
| Rv2796c/lppV | (cc=0.5178) | info on Rv2796c/lppV |
| Rv1291c/- | (cc=0.5151) | info on Rv1291c/- |
| Rv2328/PE23 | (cc=0.4572) | info on Rv2328/PE23 |
| Rv2599/- | (cc=0.4539) | info on Rv2599/- |
| Rv2282c/- | (cc=0.4454) | info on Rv2282c/- |
| Rv1541c/lprI | (cc=0.4433) | info on Rv1541c/lprI |
| Rv3195/- | (cc=0.4374) | info on Rv3195/- |
| Rv0843/- | (cc=0.414) | info on Rv0843/- |
| Rv3353c/- | (cc=0.4113) | info on Rv3353c/- |
Correlation of Rv2331A/- with Rv0379/secE2
Normalized LFCs for Rv2331A/-:
(description and provenance of datasets)
| Rv2331A/- | Rv0379/secE2 | |
| Fe_supp_jason_reseq | -0.303 | -0.707 |
| low_pH_jason_reseq | -0.581 | -0.32 |
| NO_jason_reseq | 0.961 | 1.197 |
| B6_jason_reseq | 0.625 | -0.727 |
| MHCII_jason_reseq | 0.055 | -0.542 |
| Isoniazid02 | 0.611 | 0.799 |
| Rifampicin4 | 0.249 | 0.046 |
| Ethambutol3 | -0.024 | 1.3 |
| Meropenem3 | -0.359 | 0.272 |
| Vancomycin16 | -0.202 | 0.44 |
| Rv2680_day32 | -1.289 | -0.692 |
| H37Rv_KO_MarP | 0.804 | -0.339 |
| hypoxia_3wks | -0.686 | -1.703 |
| hypoxia_6wks | 0.833 | 0.597 |
| glycerol | -0.192 | 1.29 |
| cholesterol | 0.3 | 0.307 |
| AJ | 0.896 | 0.178 |
| Bibs02 | -1.34 | 0.943 |
| Bibs02c | -0.417 | 0.562 |
| BL6 | -0.968 | -0.753 |
| BL6a | -0.507 | -0.694 |
| BXD01 | -0.748 | -3.242 |
| BXD010 | 0.716 | -1.486 |
| BXD011 | -0.822 | -2.338 |
| BXD03 | -0.516 | -3.193 |
| BXD04 | -0.864 | -2.154 |
| BXD05 | 0.045 | -2.001 |
| BXD06 | -0.322 | -1.712 |
| BXD07 | -0.541 | -3.111 |
| BXD08 | -0.26 | -2.542 |
| BXD09 | -0.359 | -2.019 |
| CAST | 0.14 | -0.552 |
| CCcont | -1.112 | -1.958 |
| DS01 | -0.647 | 0.289 |
| DS02 | -0.019 | 0.159 |
| DS04 | 0.097 | 0.048 |
| DS0c | 0.006 | -0.13 |
| GP01 | -1.468 | -2.055 |
| GP02 | 0.418 | -2.334 |
| GP0c | -2.744 | -2.237 |
| NOD | 0.195 | -0.937 |
| NZO | 0.464 | -0.759 |
| PWK | -0.023 | 0.681 |
| H37Rv_KO_CtpC | 0.085 | -0.505 |
| H37Rv_KO_CtpD | -1.192 | -0.49 |
| H37Rv_KO_Rv1272 | 1.059 | 0.006 |
| H37Rv_KO_SugABC | -2.029 | -2.379 |
| H37Rv_KO_MbtN | -0.072 | -1.646 |
| Trans05 | -1.266 | -0.513 |
| macrophage_unactivated | -1.695 | 0.035 |
| IL1 | -0.448 | -0.392 |
| Rapamycin | -0.288 | -0.365 |
| Tcell | -0.609 | -1.039 |
| GMCSF | 0.0 | -2.521 |
| IFNab | -0.701 | -1.466 |
| IFNg | -2.183 | -1.048 |
| IFNg_GMCSF1 | 3.972 | 2.118 |
| Rv1432_day32 | -0.312 | 0.18 |
| Rv1565c_day32 | 0.791 | -0.085 |
| secA2_input | -1.028 | -1.49 |
| delta_Rv3594 | 0.248 | 0.078 |
| delta_Rv3717 | 0.147 | -1.111 |
| delta_Rv3811 | 0.724 | 0.843 |
| delta_Rv0954 | -0.189 | 1.454 |
| PonA1 | 0.955 | 0.87 |
| EccD1_KO | 0.645 | -0.02 |
| EspI_KO | 2.464 | 0.319 |
| PE35_KO | 0.601 | 0.055 |
| PPE68_KO | 0.861 | 0.32 |
| glycerol2 | 0.311 | 1.188 |
| lignocerate | 1.12 | 2.25 |
| oleate | 0.0 | 0.0 |
| phosphatidylcholine | 0.536 | 1.401 |
| acetate | 0.449 | 3.712 |
| glucAc | 1.604 | 3.12 |
| Rv0950ko | 0.274 | 3.347 |
| Rv1096ko | 1.224 | 2.925 |
| Rv3684ko | 0.874 | 2.689 |
| delta_otsA_trehalose | -2.441 | -1.235 |