Top 10 genes with highest correlation to Rv2212/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3395c/- | (cc=0.6468) | info on Rv3395c/- |
| Rv2426c/- | (cc=0.6236) | info on Rv2426c/- |
| Rv2007c/fdxA | (cc=0.6173) | info on Rv2007c/fdxA |
| Rv2499c/- | (cc=0.593) | info on Rv2499c/- |
| Rv0570/nrdZ | (cc=0.577) | info on Rv0570/nrdZ |
| Rv2323c/- | (cc=0.5691) | info on Rv2323c/- |
| Rv0616A/vapB29 | (cc=0.565) | info on Rv0616A/vapB29 |
| Rv3217c/- | (cc=0.5643) | info on Rv3217c/- |
| Rv0963c/- | (cc=0.561) | info on Rv0963c/- |
| Rv2019/- | (cc=0.5608) | info on Rv2019/- |
Correlation of Rv2212/- with Rv3395c/-
Normalized LFCs for Rv2212/-:
(description and provenance of datasets)
| Rv2212/- | Rv3395c/- | |
| Fe_supp_jason_reseq | 0.494 | 0.38 |
| low_pH_jason_reseq | -0.209 | 0.142 |
| NO_jason_reseq | 0.404 | 1.496 |
| B6_jason_reseq | 1.012 | 2.279 |
| MHCII_jason_reseq | 0.151 | 2.468 |
| Isoniazid02 | 0.292 | 2.949 |
| Rifampicin4 | 0.401 | 1.776 |
| Ethambutol3 | 0.401 | 2.824 |
| Meropenem3 | -0.189 | 0.666 |
| Vancomycin16 | 0.064 | 0.83 |
| Rv2680_day32 | 0.484 | -0.131 |
| H37Rv_KO_MarP | 0.452 | 0.207 |
| hypoxia_3wks | -1.116 | -1.463 |
| hypoxia_6wks | 0.292 | -1.685 |
| glycerol | -1.018 | 1.328 |
| cholesterol | -0.12 | -0.104 |
| AJ | 0.642 | 0.723 |
| Bibs02 | -0.465 | -1.807 |
| Bibs02c | -0.33 | -0.13 |
| BL6 | 1.022 | -1.264 |
| BL6a | -0.425 | -0.217 |
| BXD01 | -0.734 | -1.377 |
| BXD010 | 0.437 | -1.699 |
| BXD011 | -0.292 | -1.44 |
| BXD03 | -0.31 | -2.616 |
| BXD04 | -0.599 | -1.368 |
| BXD05 | -0.105 | -1.745 |
| BXD06 | -0.346 | -2.2 |
| BXD07 | -0.555 | -3.021 |
| BXD08 | -0.127 | 1.085 |
| BXD09 | -0.81 | -2.15 |
| CAST | 0.15 | 0.02 |
| CCcont | -0.085 | -0.876 |
| DS01 | -0.056 | -0.303 |
| DS02 | -0.035 | 0.214 |
| DS04 | 0.119 | 0.0 |
| DS0c | -0.151 | 0.231 |
| GP01 | -0.39 | -1.669 |
| GP02 | -0.731 | -1.61 |
| GP0c | -0.053 | -0.931 |
| NOD | -0.225 | -0.971 |
| NZO | -0.199 | -0.218 |
| PWK | 0.054 | 0.871 |
| H37Rv_KO_CtpC | -0.872 | -3.435 |
| H37Rv_KO_CtpD | -0.149 | -2.598 |
| H37Rv_KO_Rv1272 | -0.022 | 1.022 |
| H37Rv_KO_SugABC | -1.303 | -1.973 |
| H37Rv_KO_MbtN | -0.081 | -1.836 |
| Trans05 | 0.296 | -0.045 |
| macrophage_unactivated | -0.388 | -3.857 |
| IL1 | -0.3 | -4.405 |
| Rapamycin | -0.74 | -3.069 |
| Tcell | -1.18 | -2.255 |
| GMCSF | 0.153 | -2.64 |
| IFNab | 0.039 | -0.553 |
| IFNg | -0.623 | -1.849 |
| IFNg_GMCSF1 | 0.374 | -1.524 |
| Rv1432_day32 | 0.086 | -0.142 |
| Rv1565c_day32 | -0.246 | -2.088 |
| secA2_input | -0.794 | 1.108 |
| delta_Rv3594 | 1.159 | 2.877 |
| delta_Rv3717 | 0.403 | 3.361 |
| delta_Rv3811 | 0.0 | 1.988 |
| delta_Rv0954 | 1.257 | 2.113 |
| PonA1 | 0.948 | 2.765 |
| EccD1_KO | 0.27 | -0.296 |
| EspI_KO | 0.399 | -1.335 |
| PE35_KO | 0.023 | -1.508 |
| PPE68_KO | 0.557 | -1.129 |
| glycerol2 | 0.872 | 3.254 |
| lignocerate | 1.78 | 3.841 |
| oleate | -0.523 | 0.0 |
| phosphatidylcholine | 1.136 | 3.408 |
| acetate | 1.504 | 5.243 |
| glucAc | 1.463 | 3.947 |
| Rv0950ko | 0.844 | -0.344 |
| Rv1096ko | 0.513 | 0.268 |
| Rv3684ko | -0.472 | 0.4 |
| delta_otsA_trehalose | 0.862 | -0.408 |