TnSeqCorr

Top 10 genes with highest correlation to Rv2128/-:

update plotcorrelationlink to info on gene
Rv3363c/- (cc=0.5268) info on Rv3363c/-
Rv2169c/- (cc=0.5069) info on Rv2169c/-
Rv2909c/rpsP (cc=0.4902) info on Rv2909c/rpsP
Rv0526/- (cc=0.4862) info on Rv0526/-
Rv3455c/truA (cc=0.4842) info on Rv3455c/truA
Rv1869c/- (cc=0.4808) info on Rv1869c/-
Rv1397c/vapC10 (cc=0.4666) info on Rv1397c/vapC10
Rv2270/lppN (cc=0.4529) info on Rv2270/lppN
Rv2083/- (cc=0.4512) info on Rv2083/-
Rv2655c/- (cc=0.4494) info on Rv2655c/-

Correlation of Rv2128/- with Rv2083/-

Normalized LFCs for Rv2128/-:
(description and provenance of datasets)
Rv2128/-Rv2083/-
Fe_supp_jason_reseq

1.972

0.221

low_pH_jason_reseq

1.355

0.843

NO_jason_reseq

0.284

-0.782

B6_jason_reseq

1.181

-0.223

MHCII_jason_reseq

1.022

0.977

Isoniazid02

-0.162

0.64

Rifampicin4

-0.734

1.324

Ethambutol3

0.097

2.234

Meropenem3

0.806

0.758

Vancomycin16

-0.828

0.499

Rv2680_day32

0.241

0.184

H37Rv_KO_MarP

-0.842

-0.217

hypoxia_3wks

-1.34

0.53

hypoxia_6wks

-1.831

-0.215

glycerol

-0.13

0.613

cholesterol

-0.637

0.119

AJ

0.703

0.829

Bibs02

-0.148

0.27

Bibs02c

0.402

1.643

BL6

-0.887

-0.434

BL6a

0.529

1.247

BXD01

-0.924

-0.269

BXD010

0.27

0.488

BXD011

0.604

-0.09

BXD03

-0.677

0.594

BXD04

1.188

0.294

BXD05

-0.215

0.045

BXD06

-0.021

-0.221

BXD07

0.063

-0.458

BXD08

-0.142

0.116

BXD09

0.305

0.365

CAST

-0.41

0.527

CCcont

-1.254

-0.817

DS01

-1.466

1.304

DS02

0.417

0.632

DS04

-1.123

0.371

DS0c

-1.606

-0.127

GP01

-2.407

0.039

GP02

-0.263

1.442

GP0c

-1.904

0.378

NOD

0.052

0.574

NZO

-0.877

0.688

PWK

0.512

0.709

H37Rv_KO_CtpC

0.462

1.012

H37Rv_KO_CtpD

-0.25

0.686

H37Rv_KO_Rv1272

1.962

1.624

H37Rv_KO_SugABC

0.144

0.703

H37Rv_KO_MbtN

0.263

-0.832

Trans05

1.251

0.935

macrophage_unactivated

-0.906

0.83

IL1

0.371

0.952

Rapamycin

0.709

0.147

Tcell

-0.935

0.137

GMCSF

-0.539

0.473

IFNab

-0.868

1.052

IFNg

-0.454

1.229

IFNg_GMCSF1

-2.338

0.581

Rv1432_day32

0.18

0.777

Rv1565c_day32

-0.12

0.584

secA2_input

-1.191

0.205

delta_Rv3594

-0.269

0.662

delta_Rv3717

-0.919

0.94

delta_Rv3811

-0.381

0.956

delta_Rv0954

-0.138

0.804

PonA1

-1.295

-0.882

EccD1_KO

0.414

1.184

EspI_KO

1.221

1.363

PE35_KO

-0.245

0.974

PPE68_KO

-0.166

0.336

glycerol2

-2.935

-0.921

lignocerate

-1.894

-1.23

oleate

-2.04

-0.037

phosphatidylcholine

-2.703

-0.534

acetate

-1.483

-1.769

glucAc

-2.212

-2.327

Rv0950ko

-0.537

-0.748

Rv1096ko

-1.544

-0.679

Rv3684ko

-0.059

-1.461

delta_otsA_trehalose

1.206

1.124