Top 10 genes with highest correlation to Rv2014/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1182/papA3 | (cc=0.6422) | info on Rv1182/papA3 |
| Rv3607c/folB | (cc=0.6178) | info on Rv3607c/folB |
| Rv0571c/- | (cc=0.6145) | info on Rv0571c/- |
| Rv2499c/- | (cc=0.6109) | info on Rv2499c/- |
| Rv1734c/- | (cc=0.6046) | info on Rv1734c/- |
| Rv0687/- | (cc=0.6039) | info on Rv0687/- |
| Rv0985c/mscL | (cc=0.6021) | info on Rv0985c/mscL |
| Rv2474c/- | (cc=0.5935) | info on Rv2474c/- |
| Rv0817c/- | (cc=0.5934) | info on Rv0817c/- |
| Rv1973/- | (cc=0.5892) | info on Rv1973/- |
Correlation of Rv2014/- with Rv1182/papA3
Normalized LFCs for Rv2014/-:
(description and provenance of datasets)
| Rv2014/- | Rv1182/papA3 | |
| Fe_supp_jason_reseq | -1.209 | 0.169 |
| low_pH_jason_reseq | 2.327 | 0.915 |
| NO_jason_reseq | -0.391 | 0.478 |
| B6_jason_reseq | -1.736 | 1.789 |
| MHCII_jason_reseq | -0.29 | 1.842 |
| Isoniazid02 | 0.083 | 0.332 |
| Rifampicin4 | 1.367 | 0.0 |
| Ethambutol3 | 0.574 | 1.685 |
| Meropenem3 | 0.041 | -0.025 |
| Vancomycin16 | 0.804 | 0.212 |
| Rv2680_day32 | -2.338 | -0.193 |
| H37Rv_KO_MarP | -0.119 | 0.574 |
| hypoxia_3wks | -0.618 | -0.69 |
| hypoxia_6wks | -0.743 | -0.422 |
| glycerol | -0.693 | -0.038 |
| cholesterol | -0.773 | 0.461 |
| AJ | -0.857 | 0.197 |
| Bibs02 | 0.076 | 0.356 |
| Bibs02c | -0.5 | -0.136 |
| BL6 | -3.164 | -1.421 |
| BL6a | -2.302 | -1.221 |
| BXD01 | -1.669 | -1.839 |
| BXD010 | -3.816 | -0.665 |
| BXD011 | -1.738 | -1.4 |
| BXD03 | -3.493 | -1.347 |
| BXD04 | -2.893 | -1.975 |
| BXD05 | -2.233 | -1.256 |
| BXD06 | -1.076 | -1.566 |
| BXD07 | -1.71 | -1.599 |
| BXD08 | -0.136 | -1.241 |
| BXD09 | -2.819 | -1.4 |
| CAST | 0.01 | 0.155 |
| CCcont | -2.089 | -1.219 |
| DS01 | 0.128 | 0.385 |
| DS02 | 0.904 | 0.271 |
| DS04 | -0.159 | 0.756 |
| DS0c | 0.09 | 0.245 |
| GP01 | -0.607 | -1.394 |
| GP02 | -1.946 | -1.579 |
| GP0c | -1.405 | -1.63 |
| NOD | 0.103 | 0.952 |
| NZO | -0.646 | 0.013 |
| PWK | -0.725 | 0.668 |
| H37Rv_KO_CtpC | -2.272 | -0.624 |
| H37Rv_KO_CtpD | -1.114 | -1.918 |
| H37Rv_KO_Rv1272 | -0.855 | -0.952 |
| H37Rv_KO_SugABC | -1.897 | -0.837 |
| H37Rv_KO_MbtN | -0.742 | 0.122 |
| Trans05 | -0.375 | 0.191 |
| macrophage_unactivated | -2.655 | -2.039 |
| IL1 | -1.679 | -0.718 |
| Rapamycin | -4.174 | -0.967 |
| Tcell | -2.32 | -2.105 |
| GMCSF | -3.591 | -1.41 |
| IFNab | -3.694 | -1.953 |
| IFNg | -6.0 | -2.793 |
| IFNg_GMCSF1 | 0.173 | -1.609 |
| Rv1432_day32 | -0.206 | -0.508 |
| Rv1565c_day32 | -0.021 | 0.088 |
| secA2_input | -0.631 | 0.0 |
| delta_Rv3594 | 0.921 | 0.502 |
| delta_Rv3717 | 1.609 | -0.268 |
| delta_Rv3811 | -0.107 | 0.827 |
| delta_Rv0954 | 0.323 | 0.24 |
| PonA1 | 0.177 | -0.067 |
| EccD1_KO | 1.681 | 0.207 |
| EspI_KO | 0.73 | 0.75 |
| PE35_KO | -0.134 | 1.21 |
| PPE68_KO | 0.518 | 1.011 |
| glycerol2 | -0.356 | 0.518 |
| lignocerate | -0.86 | 0.728 |
| oleate | -0.05 | 0.071 |
| phosphatidylcholine | -0.153 | 0.171 |
| acetate | -0.12 | -0.153 |
| glucAc | -0.941 | -0.356 |
| Rv0950ko | -0.648 | -1.152 |
| Rv1096ko | -1.975 | -0.959 |
| Rv3684ko | -0.213 | -1.624 |
| delta_otsA_trehalose | 0.122 | -0.651 |