Top 10 genes with highest correlation to Rv1954c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1954A/- | (cc=0.6871) | info on Rv1954A/- |
| Rv1508A/- | (cc=0.424) | info on Rv1508A/- |
| Rv1955/higB | (cc=0.4237) | info on Rv1955/higB |
| Rv1469/ctpD | (cc=0.4206) | info on Rv1469/ctpD |
| Rv2617c/- | (cc=0.4198) | info on Rv2617c/- |
| Rv1394c/cyp132 | (cc=0.4118) | info on Rv1394c/cyp132 |
| Rv2713/sthA | (cc=0.406) | info on Rv2713/sthA |
| Rv1398c/vapB10 | (cc=0.405) | info on Rv1398c/vapB10 |
| Rv1518/- | (cc=0.403) | info on Rv1518/- |
| Rv2777c/- | (cc=0.3999) | info on Rv2777c/- |
Correlation of Rv1954c/- with Rv1954A/-
Normalized LFCs for Rv1954c/-:
(description and provenance of datasets)
| Rv1954c/- | Rv1954A/- | |
| Fe_supp_jason_reseq | -0.147 | -0.051 |
| low_pH_jason_reseq | -0.927 | -0.878 |
| NO_jason_reseq | 0.656 | 0.795 |
| B6_jason_reseq | -0.253 | -1.023 |
| MHCII_jason_reseq | -0.123 | -0.98 |
| Isoniazid02 | -0.595 | 0.162 |
| Rifampicin4 | -0.122 | 0.699 |
| Ethambutol3 | 2.064 | -0.047 |
| Meropenem3 | -0.437 | 0.236 |
| Vancomycin16 | -0.663 | 0.034 |
| Rv2680_day32 | 0.686 | 0.267 |
| H37Rv_KO_MarP | 0.202 | 0.679 |
| hypoxia_3wks | -0.873 | -0.909 |
| hypoxia_6wks | -0.482 | -1.04 |
| glycerol | -0.36 | -1.412 |
| cholesterol | -0.96 | -1.382 |
| AJ | -0.432 | -0.906 |
| Bibs02 | -0.34 | -0.631 |
| Bibs02c | -0.655 | -0.423 |
| BL6 | 0.99 | 1.662 |
| BL6a | -0.129 | 0.082 |
| BXD01 | -0.306 | -0.17 |
| BXD010 | 0.224 | 0.235 |
| BXD011 | 0.237 | 0.376 |
| BXD03 | 0.336 | 1.021 |
| BXD04 | -0.081 | 0.345 |
| BXD05 | 0.604 | 1.009 |
| BXD06 | 0.249 | 0.464 |
| BXD07 | 0.269 | 0.734 |
| BXD08 | 0.183 | 0.663 |
| BXD09 | 0.206 | 0.683 |
| CAST | -0.609 | -0.352 |
| CCcont | -0.529 | -0.105 |
| DS01 | -0.197 | -0.441 |
| DS02 | -0.457 | -0.199 |
| DS04 | 0.25 | 0.049 |
| DS0c | -0.236 | -0.137 |
| GP01 | -0.014 | -0.69 |
| GP02 | 0.731 | 0.515 |
| GP0c | 0.152 | -0.193 |
| NOD | 1.053 | -0.351 |
| NZO | -0.598 | -1.113 |
| PWK | -0.649 | -0.756 |
| H37Rv_KO_CtpC | -0.177 | -0.545 |
| H37Rv_KO_CtpD | -0.682 | -0.004 |
| H37Rv_KO_Rv1272 | 1.088 | 1.449 |
| H37Rv_KO_SugABC | -1.919 | -2.115 |
| H37Rv_KO_MbtN | -1.354 | -1.266 |
| Trans05 | 0.499 | 0.628 |
| macrophage_unactivated | 0.641 | -0.174 |
| IL1 | -0.104 | -0.065 |
| Rapamycin | 0.092 | 0.7 |
| Tcell | -0.16 | 0.414 |
| GMCSF | -0.129 | 0.121 |
| IFNab | 0.257 | 0.78 |
| IFNg | -0.069 | 0.123 |
| IFNg_GMCSF1 | 0.481 | 1.084 |
| Rv1432_day32 | 0.45 | 0.746 |
| Rv1565c_day32 | 0.191 | -0.839 |
| secA2_input | -0.792 | -1.506 |
| delta_Rv3594 | 0.187 | 0.021 |
| delta_Rv3717 | 0.264 | 0.461 |
| delta_Rv3811 | -0.091 | -0.32 |
| delta_Rv0954 | -0.084 | -0.605 |
| PonA1 | -0.494 | -0.433 |
| EccD1_KO | 0.155 | 0.135 |
| EspI_KO | 0.388 | 0.713 |
| PE35_KO | -0.041 | 0.12 |
| PPE68_KO | 0.09 | 0.32 |
| glycerol2 | 0.364 | -0.046 |
| lignocerate | 0.416 | 0.557 |
| oleate | 0.279 | -0.437 |
| phosphatidylcholine | 0.343 | 0.246 |
| acetate | -0.047 | 0.256 |
| glucAc | 0.434 | 0.797 |
| Rv0950ko | 0.0 | -0.326 |
| Rv1096ko | -0.256 | -0.745 |
| Rv3684ko | -0.576 | -1.896 |
| delta_otsA_trehalose | -0.934 | -1.174 |