Top 10 genes with highest correlation to Rv1941/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0379/secE2 | (cc=0.5565) | info on Rv0379/secE2 |
| Rv2237A/- | (cc=0.5495) | info on Rv2237A/- |
| Rv2007c/fdxA | (cc=0.5423) | info on Rv2007c/fdxA |
| Rv3100c/smpB | (cc=0.5285) | info on Rv3100c/smpB |
| Rv1738/- | (cc=0.5222) | info on Rv1738/- |
| Rv0084/hycD | (cc=0.5166) | info on Rv0084/hycD |
| Rv2064/cobG | (cc=0.5086) | info on Rv2064/cobG |
| Rv3534c/hsaF | (cc=0.4812) | info on Rv3534c/hsaF |
| Rv0470A/- | (cc=0.4727) | info on Rv0470A/- |
| Rv3786c/- | (cc=0.4685) | info on Rv3786c/- |
Correlation of Rv1941/- with Rv0379/secE2
Normalized LFCs for Rv1941/-:
(description and provenance of datasets)
| Rv1941/- | Rv0379/secE2 | |
| Fe_supp_jason_reseq | -1.173 | -0.707 |
| low_pH_jason_reseq | 0.181 | -0.32 |
| NO_jason_reseq | 0.097 | 1.197 |
| B6_jason_reseq | 0.851 | -0.727 |
| MHCII_jason_reseq | -0.4 | -0.542 |
| Isoniazid02 | 0.017 | 0.799 |
| Rifampicin4 | 0.723 | 0.046 |
| Ethambutol3 | 0.184 | 1.3 |
| Meropenem3 | 0.621 | 0.272 |
| Vancomycin16 | 0.191 | 0.44 |
| Rv2680_day32 | 0.327 | -0.692 |
| H37Rv_KO_MarP | 0.186 | -0.339 |
| hypoxia_3wks | -1.83 | -1.703 |
| hypoxia_6wks | -1.998 | 0.597 |
| glycerol | -0.693 | 1.29 |
| cholesterol | 0.792 | 0.307 |
| AJ | -0.224 | 0.178 |
| Bibs02 | 1.115 | 0.943 |
| Bibs02c | 1.725 | 0.562 |
| BL6 | 0.339 | -0.753 |
| BL6a | 0.065 | -0.694 |
| BXD01 | -2.565 | -3.242 |
| BXD010 | -1.309 | -1.486 |
| BXD011 | -1.045 | -2.338 |
| BXD03 | -1.239 | -3.193 |
| BXD04 | -3.029 | -2.154 |
| BXD05 | -2.65 | -2.001 |
| BXD06 | -2.138 | -1.712 |
| BXD07 | -1.843 | -3.111 |
| BXD08 | 0.086 | -2.542 |
| BXD09 | -1.749 | -2.019 |
| CAST | -1.261 | -0.552 |
| CCcont | -0.818 | -1.958 |
| DS01 | -0.626 | 0.289 |
| DS02 | 0.036 | 0.159 |
| DS04 | 0.682 | 0.048 |
| DS0c | 1.208 | -0.13 |
| GP01 | -2.606 | -2.055 |
| GP02 | -2.196 | -2.334 |
| GP0c | -3.432 | -2.237 |
| NOD | -2.296 | -0.937 |
| NZO | 1.072 | -0.759 |
| PWK | -0.338 | 0.681 |
| H37Rv_KO_CtpC | -1.935 | -0.505 |
| H37Rv_KO_CtpD | -2.131 | -0.49 |
| H37Rv_KO_Rv1272 | 0.462 | 0.006 |
| H37Rv_KO_SugABC | -2.343 | -2.379 |
| H37Rv_KO_MbtN | -2.284 | -1.646 |
| Trans05 | -2.646 | -0.513 |
| macrophage_unactivated | 0.436 | 0.035 |
| IL1 | -0.071 | -0.392 |
| Rapamycin | 0.488 | -0.365 |
| Tcell | 1.746 | -1.039 |
| GMCSF | 0.478 | -2.521 |
| IFNab | 0.916 | -1.466 |
| IFNg | 0.649 | -1.048 |
| IFNg_GMCSF1 | -0.154 | 2.118 |
| Rv1432_day32 | 0.0 | 0.18 |
| Rv1565c_day32 | -2.235 | -0.085 |
| secA2_input | -0.568 | -1.49 |
| delta_Rv3594 | -1.458 | 0.078 |
| delta_Rv3717 | -0.015 | -1.111 |
| delta_Rv3811 | 0.94 | 0.843 |
| delta_Rv0954 | -2.781 | 1.454 |
| PonA1 | -2.984 | 0.87 |
| EccD1_KO | 0.355 | -0.02 |
| EspI_KO | 1.546 | 0.319 |
| PE35_KO | -0.391 | 0.055 |
| PPE68_KO | -0.902 | 0.32 |
| glycerol2 | -0.122 | 1.188 |
| lignocerate | 1.71 | 2.25 |
| oleate | -1.086 | 0.0 |
| phosphatidylcholine | 0.611 | 1.401 |
| acetate | 2.169 | 3.712 |
| glucAc | 2.383 | 3.12 |
| Rv0950ko | 1.559 | 3.347 |
| Rv1096ko | 1.499 | 2.925 |
| Rv3684ko | 1.759 | 2.689 |
| delta_otsA_trehalose | 0.126 | -1.235 |