Top 10 genes with highest correlation to Rv1822/pgsA2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0012/- | (cc=0.574) | info on Rv0012/- |
| Rv3703c/- | (cc=0.5525) | info on Rv3703c/- |
| Rv0776c/- | (cc=0.5466) | info on Rv0776c/- |
| Rv0767c/- | (cc=0.5324) | info on Rv0767c/- |
| Rv3880c/espL | (cc=0.5315) | info on Rv3880c/espL |
| Rv0813c/- | (cc=0.5312) | info on Rv0813c/- |
| Rv2609c/- | (cc=0.5267) | info on Rv2609c/- |
| Rv1824/- | (cc=0.5242) | info on Rv1824/- |
| Rv1253/deaD | (cc=0.5239) | info on Rv1253/deaD |
| Rv3544c/fadE28 | (cc=0.5201) | info on Rv3544c/fadE28 |
Correlation of Rv1822/pgsA2 with Rv0012/-
Normalized LFCs for Rv1822/pgsA2:
(description and provenance of datasets)
| Rv1822/pgsA2 | Rv0012/- | |
| Fe_supp_jason_reseq | -0.268 | 2.161 |
| low_pH_jason_reseq | 0.592 | 1.171 |
| NO_jason_reseq | 0.761 | 0.583 |
| B6_jason_reseq | -0.403 | 0.692 |
| MHCII_jason_reseq | -0.829 | 1.143 |
| Isoniazid02 | 0.0 | -1.404 |
| Rifampicin4 | -1.535 | -1.633 |
| Ethambutol3 | -0.689 | -1.597 |
| Meropenem3 | -0.956 | -0.944 |
| Vancomycin16 | -1.647 | -2.608 |
| Rv2680_day32 | -0.228 | -2.492 |
| H37Rv_KO_MarP | 4.407 | 6.0 |
| hypoxia_3wks | 0.0 | -0.57 |
| hypoxia_6wks | -0.263 | -1.52 |
| glycerol | 0.0 | 0.604 |
| cholesterol | -0.614 | -0.78 |
| AJ | -0.496 | -1.649 |
| Bibs02 | -0.672 | -0.183 |
| Bibs02c | -2.172 | -1.249 |
| BL6 | -1.298 | -2.486 |
| BL6a | -1.679 | -2.414 |
| BXD01 | -1.352 | -2.712 |
| BXD010 | -1.329 | -2.488 |
| BXD011 | -1.195 | -1.935 |
| BXD03 | -1.404 | -3.729 |
| BXD04 | -1.284 | -3.195 |
| BXD05 | -1.263 | -2.349 |
| BXD06 | -1.386 | -2.995 |
| BXD07 | -1.437 | -3.37 |
| BXD08 | -1.248 | -3.333 |
| BXD09 | -1.191 | -3.073 |
| CAST | -1.582 | -2.659 |
| CCcont | -1.55 | 0.069 |
| DS01 | -1.451 | -2.091 |
| DS02 | -1.336 | -1.925 |
| DS04 | -1.644 | -1.945 |
| DS0c | -1.49 | -0.702 |
| GP01 | -0.607 | -1.876 |
| GP02 | -0.864 | -2.085 |
| GP0c | -0.993 | -1.327 |
| NOD | -1.543 | -0.854 |
| NZO | -1.225 | -2.263 |
| PWK | -0.615 | -2.39 |
| H37Rv_KO_CtpC | -0.131 | -2.015 |
| H37Rv_KO_CtpD | 0.417 | 0.206 |
| H37Rv_KO_Rv1272 | -1.464 | -0.876 |
| H37Rv_KO_SugABC | 1.058 | -2.281 |
| H37Rv_KO_MbtN | 0.113 | -1.659 |
| Trans05 | 0.274 | -2.234 |
| macrophage_unactivated | -0.701 | -1.774 |
| IL1 | 0.0 | 0.394 |
| Rapamycin | 1.353 | -0.611 |
| Tcell | -0.723 | -0.313 |
| GMCSF | -1.281 | -1.307 |
| IFNab | -1.052 | -1.911 |
| IFNg | -1.296 | -1.323 |
| IFNg_GMCSF1 | -0.336 | -1.354 |
| Rv1432_day32 | -0.632 | -2.293 |
| Rv1565c_day32 | 0.076 | -0.186 |
| secA2_input | 0.806 | 2.074 |
| delta_Rv3594 | 4.13 | -0.084 |
| delta_Rv3717 | 2.605 | -1.37 |
| delta_Rv3811 | 5.004 | 0.242 |
| delta_Rv0954 | 0.34 | 0.26 |
| PonA1 | 2.505 | 0.74 |
| EccD1_KO | -0.793 | -2.815 |
| EspI_KO | -1.292 | -2.9 |
| PE35_KO | 0.461 | -0.073 |
| PPE68_KO | 0.506 | -1.587 |
| glycerol2 | 0.0 | -1.772 |
| lignocerate | 0.0 | -1.29 |
| oleate | 0.0 | -2.28 |
| phosphatidylcholine | 0.0 | -0.598 |
| acetate | 0.63 | 0.389 |
| glucAc | 0.0 | 0.07 |
| Rv0950ko | 1.517 | 0.832 |
| Rv1096ko | -0.38 | -3.049 |
| Rv3684ko | 0.0 | 0.141 |
| delta_otsA_trehalose | -0.564 | 1.33 |