TnSeqCorr

Top 10 genes with highest correlation to Rv1799/lppT:
none

Correlation of Rv1799/lppT with Rv1799/lppT

Normalized LFCs for Rv1799/lppT:
(description and provenance of datasets)
Rv1799/lppTRv1799/lppT
Fe_supp_jason_reseq

1.49

1.49

low_pH_jason_reseq

0.112

0.112

NO_jason_reseq

2.247

2.247

B6_jason_reseq

-0.538

-0.538

MHCII_jason_reseq

0.997

0.997

Isoniazid02

0.214

0.214

Rifampicin4

1.124

1.124

Ethambutol3

0.358

0.358

Meropenem3

0.284

0.284

Vancomycin16

0.817

0.817

Rv2680_day32

0.359

0.359

H37Rv_KO_MarP

0.787

0.787

hypoxia_3wks

-4.235

-4.235

hypoxia_6wks

-0.662

-0.662

glycerol

0.12

0.12

cholesterol

-1.829

-1.829

AJ

-1.713

-1.713

Bibs02

0.189

0.189

Bibs02c

-0.735

-0.735

BL6

-2.325

-2.325

BL6a

-3.188

-3.188

BXD01

-2.779

-2.779

BXD010

-2.434

-2.434

BXD011

-1.973

-1.973

BXD03

-3.388

-3.388

BXD04

-1.48

-1.48

BXD05

-1.699

-1.699

BXD06

-2.107

-2.107

BXD07

-1.49

-1.49

BXD08

-2.472

-2.472

BXD09

-2.73

-2.73

CAST

-0.464

-0.464

CCcont

-1.665

-1.665

DS01

-1.743

-1.743

DS02

-2.299

-2.299

DS04

-4.243

-4.243

DS0c

-1.347

-1.347

GP01

-2.822

-2.822

GP02

-2.378

-2.378

GP0c

-3.716

-3.716

NOD

-1.818

-1.818

NZO

-0.759

-0.759

PWK

-2.663

-2.663

H37Rv_KO_CtpC

0.673

0.673

H37Rv_KO_CtpD

0.306

0.306

H37Rv_KO_Rv1272

-3.084

-3.084

H37Rv_KO_SugABC

-2.281

-2.281

H37Rv_KO_MbtN

-1.799

-1.799

Trans05

-1.221

-1.221

macrophage_unactivated

-0.265

-0.265

IL1

1.486

1.486

Rapamycin

1.231

1.231

Tcell

-0.368

-0.368

GMCSF

3.475

3.475

IFNab

-0.432

-0.432

IFNg

2.33

2.33

IFNg_GMCSF1

0.0

0.0

Rv1432_day32

0.0

0.0

Rv1565c_day32

0.109

0.109

secA2_input

-1.243

-1.243

delta_Rv3594

0.727

0.727

delta_Rv3717

-0.751

-0.751

delta_Rv3811

0.0

0.0

delta_Rv0954

1.65

1.65

PonA1

0.11

0.11

EccD1_KO

2.164

2.164

EspI_KO

-0.057

-0.057

PE35_KO

0.397

0.397

PPE68_KO

-0.269

-0.269

glycerol2

0.193

0.193

lignocerate

1.745

1.745

oleate

0.0

0.0

phosphatidylcholine

0.193

0.193

acetate

2.553

2.553

glucAc

3.478

3.478

Rv0950ko

-1.646

-1.646

Rv1096ko

-0.244

-0.244

Rv3684ko

0.0

0.0

delta_otsA_trehalose

-3.213

-3.213